| GR00002-A |
33835 |
FBgn0001942 |
eIF-4a |
DRSC03526 |
3.147166637 |
Increased lipid droplet area |
|
no |
|
Lipid storage |
COPI complex is a regulator of lipid homeostasis. |
Beller et al. |
2008 |
19067489 |
Cell line |
Kc167 |
Nuclear to lipid droplet cross-sectional area |
Fluorescence |
np |
Genome-wide |
dsRNA |
B-score |
> 2 OR < -1.7 |
Additional information about a secondary screen with non-overlaping dsRNAs |
GR00002-A |
33835 |
FBgn0001942 |
eIF-4a |
DRSC03526 |
4.536100146 |
Increased lipid droplet area |
|
no |
|
Lipid storage |
COPI complex is a regulator of lipid homeostasis. |
Beller et al. |
2008 |
19067489 |
Cell line |
Kc167 |
Nuclear to lipid droplet cross-sectional area |
Fluorescence |
np |
Genome-wide |
dsRNA |
B-score |
> 2 OR < -1.7 |
Additional information about a secondary screen with non-overlaping dsRNAs |
GR00004-A-0 |
33835 |
|
eIF-4a |
DRSC03526 |
1.31 |
Endo-siRNA reporter upregulated |
|
no |
|
Drosophila small RNA pathways |
Comparative analysis of argonaute-dependent small RNA pathways in Drosophila. |
Zhou et al. |
2008 |
19026789 |
Cell line |
S2 |
miRNA and siRNA pathway activity |
Dual luciferase |
DRSC |
|
dsRNA |
Fold change endo-siRNA reporter |
1.5/0.6 |
|
GR00004-A-0 |
33835 |
|
eIF-4a |
DRSC03526 |
1.23 |
siRNA reporter upregulated |
|
no |
|
Drosophila small RNA pathways |
Comparative analysis of argonaute-dependent small RNA pathways in Drosophila. |
Zhou et al. |
2008 |
19026789 |
Cell line |
S2 |
miRNA and siRNA pathway activity |
Dual luciferase |
DRSC |
|
dsRNA |
Fold change endo-siRNA reporter |
1.5/0.6 |
|
GR00014-A |
33835 |
|
eIF-4a |
DRSC03526 |
strong |
Decreased Flag-Mad nuclear accumulation |
|
no |
|
Dpp pathway regulation |
Msk is required for nuclear import of TGF-{beta}/BMP-activated Smads. |
Xu et al. |
2007 |
17785517 |
Cell line |
S2R+ |
Flag-Mad protein expression and subcellular location |
Fluorescence |
rp |
Genome-wide |
dsRNA |
Visual inspection |
np |
|
GR00021-A-0 |
33835 |
FBgn0001942 |
|
DRSC03526 |
weak |
ERK activation reduced |
|
no |
|
ERK signaling |
A functional RNAi screen for regulators of receptor tyrosine kinase and ERK signalling. |
Friedman et al. |
2006 |
17086199 |
Cell line |
S2R+ |
ERK signaling |
Fluorescence |
DRSC |
|
dsRNA |
Weak, moderate, strong |
np |
|
GR00031-A-1 |
33835 |
|
eIF-4a |
HFA03526 |
3.6 |
Decreased cell number and viability |
|
yes |
|
Cell growth and viability (1) |
Genome-wide RNAi analysis of growth and viability in Drosophila cells. |
Boutros et al. |
2004 |
14764878 |
Cell line |
Kc167 |
Cell number and viability |
Luminescence |
Custom-made (HFA) |
Genome-wide |
dsRNA |
Z-score |
> |
|
GR00031-A-2 |
33835 |
|
eIF-4a |
HFA03526 |
4.2 |
Decreased cell number and viability |
|
no |
|
Cell growth and viability (2) |
Genome-wide RNAi analysis of growth and viability in Drosophila cells. |
Boutros et al. |
2004 |
14764878 |
Cell line |
S2R+ |
Cell number and viability |
Luminescence |
Custom-made (HFA) |
Genome-wide |
dsRNA |
Z-score |
> |
|
GR00035-A |
33835 |
CG9075 |
eIF-4a |
KP082 |
sp |
Alternative para (exon A/I) splicing |
|
no |
|
Alternative splicing |
Identification of alternative splicing regulators by RNA interference in Drosophila. |
Park et al. |
2004 |
15492211 |
Cell line |
S2 |
dAdar, para and Dscam mRNA expression |
Reverse transcription PCR and autoradiography |
Custom-made |
RNA-binding protein genes and spliceosomal genes |
dsRNA |
np |
Alternative exon splicing for > |
|
GR00047-A-1 |
33835 |
FBgn0001942 |
eIF-4a |
DRSC03526 |
sp |
Decreased horseradish peroxidase protein expression |
|
no |
|
Constitutive protein secretion and Golgi organization (1) |
Functional genomics reveals genes involved in protein secretion and Golgi organization. |
Bard et al. |
2006 |
16452979 |
Cell line |
S2 |
Horseradish peroxidase protein expression |
Luminescence |
|
Genome-wide |
dsRNA |
Z-score |
< -1.5 |
|
|
33835 |
FBgn0001942 |
eIF-4a |
GM14109 |
sp |
Increased G1 DNA content, decreased G2 DNA content, decreased cytokinesis |
|
yes |
library: DGC1 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
33835 |
FBgn0004242, FBgn0001942 |
syt, eIF-4a |
GH17619 |
sp |
none |
|
no |
library: DGC1 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
33835 |
FBgn0001942 |
CR32646, eIF-4a |
SD06908 |
sp |
none |
|
no |
library: DGC1 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
33835 |
FBgn0001942 |
eIF-4a |
SD27446 |
sp |
none |
|
no |
library: DGC2 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
33835 |
FBgn0027339, FBgn0001942 |
jim, eIF-4a |
GH03937 |
sp |
none |
|
no |
library: DGC1 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
GR00048-A-2 |
33835 |
FBgn0001942 |
eIF-4a |
np |
0.982 |
none |
|
yes |
|
Cell size and cell-cycle regulation (2) |
Identification of pathways regulating cell size and cell-cycle progression by RNAi. |
BjÓ§rklund et al. |
2006 |
16496002 |
Cell line |
S2 |
Proliferation and viability |
Colorimetrics |
|
Selected genes |
dsRNA |
MTS metabolic activity |
> 2.5 standard deviations |
Additional information about the primary screen (pooled library) and a secondary screen (number of binucleate cells) |
GR00048-A-3 |
33835 |
FBgn0001942 |
eIF-4a |
np |
448 |
none |
|
no |
|
Cell size and cell-cycle regulation (3) |
Identification of pathways regulating cell size and cell-cycle progression by RNAi. |
BjÓ§rklund et al. |
2006 |
16496002 |
Cell line |
S2 |
Cell number |
Fluorescence |
|
Selected genes |
dsRNA |
Average cell number per field |
> 2 standard deviations |
Additional information about the primary screen (pooled library) and a secondary screen (number of binucleate cells) |
GR00086-A-0 |
33835 |
FBgn0001942 |
|
DRSC26043 |
-3.08/-2.91 |
Decreased Influenza replication |
|
no |
|
Influenza replication |
Drosophila RNAi screen identifies host genes important for influenza virus replication. |
Hao et al. |
2008 |
18615016 |
Cell line |
DL1 |
Influenza replication |
Luciferase |
Ambion/DRSC |
|
dsRNA |
Z-score |
< |
|
GR00090-A-0 |
33835 |
FBgn0001942 |
CG9075 |
np |
strong |
Smaller sized lipid droplets, more dispersed |
|
no |
|
Lipid storage |
Functional genomic screen reveals genes involved in lipid-droplet formation and utilization. |
Guo et al. |
2008 |
18408709 |
Cell line |
S2 |
Lipid droplet staining |
High content (microscopy) |
OpenBiosystems |
|
dsRNA |
Visual inspection |
np |
|
GR00092-A |
33835 |
FBgn0001942 |
CG9075 |
RDM1190-7301624 |
np |
Abnormal spindle, spindle poles splayed, increased number of cells in prometaphase |
|
no |
|
Microtubule assembly and organization |
Regulation of microtubule assembly and organization in mitosis by the AAA+ ATPase Pontin. |
Ducat et al. |
2008 |
18463163 |
Cell line |
S2 |
DNA content, alpha-tubulin and CP309 protein expression |
Fluorescence |
OpenBiosystems Drosophila RNAi Library 1.0 |
Mitotic regulator genes |
dsRNA |
Complex, sp |
Complex criteria |
|
GR00128-A-2 |
33835 |
FBgn0001942 |
CG9075 |
DRSC34260 |
sp |
Synthetic lethal with methyl methanesulphonate |
|
no |
|
Combinatorial effect with methyl methanesulphonate (2) |
A network of conserved damage survival pathways revealed by a genomic RNAi screen. |
Ravi et al. |
2009 |
19543366 |
Cell line |
Kc167 |
Viability (synthetic lethal) |
Luminescence |
Version 1 |
Selected genes |
dsRNA |
rp |
rp |
|
GR00130-A |
33835 |
FBgn0001942 |
eIF-4a |
np |
<= -2 |
Decreased mutant human huntingtin aggregation |
|
no |
|
Mutant human huntingtin aggregation |
RNAi screening in Drosophila cells identifies new modifiers of mutant huntingtin aggregation. |
Doumanis et al. |
2009 |
19789644 |
Cell line |
BG2-c2 |
Nhtt(62Q)EGFP aggregate number and size |
Fluorescence |
OpenBiosystems RNAi library |
Selected genes |
dsRNA |
Z-score |
Suppressor: < |
|
GR00131-A-1 |
33835 |
|
eIF-4a |
DRSC26043 |
50 - 75 |
Altered mitochondrial Ca2+ and/or H+ levels |
|
no |
|
Mitochondrial Ca2+/H+ antiporter regulation (1) |
Genome-wide RNAi screen identifies Letm1 as a mitochondrial Ca2+/H+ antiporter. |
Jiang et al. |
2009 |
19797662 |
Cell line |
S2 |
mt-pericam protein expression (reporter of mitochondrial Ca2+ and H+ levels) |
Fluorescence |
np |
Genome-wide |
dsRNA |
Percentage inhibition |
Class I: > 75; class II: 50-75; class III: 25–50 |
|
GR00131-A-1 |
33835 |
|
eIF-4a |
DRSC03526 |
50 - 75 |
Altered mitochondrial Ca2+ and/or H+ levels |
|
no |
|
Mitochondrial Ca2+/H+ antiporter regulation (1) |
Genome-wide RNAi screen identifies Letm1 as a mitochondrial Ca2+/H+ antiporter. |
Jiang et al. |
2009 |
19797662 |
Cell line |
S2 |
mt-pericam protein expression (reporter of mitochondrial Ca2+ and H+ levels) |
Fluorescence |
np |
Genome-wide |
dsRNA |
Percentage inhibition |
Class I: > 75; class II: 50-75; class III: 25–50 |
|
GR00134-A-1 |
33835 |
CG9075 |
eIF-4a |
42201 |
np |
Lethal |
|
yes |
late larval |
Muscle morphogenesis and function (1) |
Systematic genetic analysis of muscle morphogenesis and function in Drosophila. |
Schnorrer et al. |
2010 |
20220848 |
Tissue |
Mef2-GAL4 |
Posture, locomotion, flight and viability |
Visual inspection |
np |
Genome-wide |
UAS-IR construct |
rp |
S19 > 0.5 |
|
GR00134-A-1 |
33835 |
CG9075 |
eIF-4a |
42202 |
np |
Lethal |
|
yes |
early larval |
Muscle morphogenesis and function (1) |
Systematic genetic analysis of muscle morphogenesis and function in Drosophila. |
Schnorrer et al. |
2010 |
20220848 |
Tissue |
Mef2-GAL4 |
Posture, locomotion, flight and viability |
Visual inspection |
np |
Genome-wide |
UAS-IR construct |
rp |
S19 > 0.5 |
|
GR00134-A-2 |
33835 |
CG9075 |
eIF-4a |
np |
np |
Wing posture / locomotion / ability to fly defect or lethal / semi-lethal |
|
yes |
|
Muscle morphogenesis and function (2) |
Systematic genetic analysis of muscle morphogenesis and function in Drosophila. |
Schnorrer et al. |
2010 |
20220848 |
Tissue |
Mef2-GAL4 |
Posture, locomotion, flight and viability |
Visual inspection |
Custom-made |
Selected genes |
UAS-IR construct |
rp |
S19 > 0.5 |
|
GR00134-A-3 |
33835 |
CG9075 |
eIF-4a |
42202 |
np |
none |
|
no |
|
Muscle morphogenesis and function (3) |
Systematic genetic analysis of muscle morphogenesis and function in Drosophila. |
Schnorrer et al. |
2010 |
20220848 |
Tissue |
Mef2-GAL4 |
ZCL0663 protein expression |
Fluorescence |
np |
Selected genes |
UAS-IR construct |
np |
np |
|
GR00135-A-1 |
33835 |
CG9075 |
eIF-4a |
42202 |
-0.62 |
none |
|
yes |
|
Heat nociception (1) |
A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionarily conserved pain gene. |
Neely et al. |
2010 |
21074052 |
Organism |
elav-GAL4 |
Noxious heat avoidance and viability |
Fly count |
np |
Genome-wide |
UAS-IR construct |
Z-score |
> 1.65 |
Additional information about secondary screens (geotactic, phototaxis, and temperature sensitivity) |
GR00138-A-1 |
33835 |
CG9075 |
|
42202 |
0.4 |
Larval lethal |
|
no |
|
Heart development and function (1) |
A global in vivo Drosophila RNAi screen identifies NOT3 as a conserved regulator of heart function. |
Neely et al. |
2010 |
20371351 |
Tissue |
TinCΔ4 12a-Gal4 |
Viability |
Fly count |
np |
Selected genes |
UAS-IR construct |
Developmental lethality |
< |
|
GR00142-A-1 |
33835 |
CG9075 |
eIF-4a |
42202 |
0.787878787878787 |
none |
|
no |
|
Serratia marcescens infection (1) |
Genome-wide RNAi screen identifies genes involved in intestinal pathogenic bacterial infection. |
Cronin et al. |
2009 |
19520911 |
Organism |
HSP70-GAL4; TubGAL80ts |
Heat shock and viability |
Fly count |
np |
Random genes |
UAS-IR construct |
Days life time (LT50) |
< -1.5 SD OR > 2 SD |
|
GR00144-A-4 |
33835 |
CG9075 |
|
42201 |
sp |
Completely lethal (pupal) |
|
no |
|
Notch pathway regulation (4) |
Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi. |
Mummery-Widmer et al. |
2009 |
19363474 |
Tissue |
pnr-GAL4 |
External sensory organ morphology and viability |
Visual inspection |
np |
Genome-wide |
UAS-IR construct |
Phenotype strength |
np |
|
GR00144-A-4 |
33835 |
CG9075 |
|
42202 |
sp |
Completely lethal (before pupal) |
|
no |
|
Notch pathway regulation (4) |
Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi. |
Mummery-Widmer et al. |
2009 |
19363474 |
Tissue |
pnr-GAL4 |
External sensory organ morphology and viability |
Visual inspection |
np |
Genome-wide |
UAS-IR construct |
Phenotype strength |
np |
|
GR00169-A |
33835 |
FBgn0001942 |
eIF-4a |
DRSC03526 |
-2.8 |
Decreased dAkt phosphorylation after insulin stimulation |
10 min insulin stimulation |
no |
|
Akt-TOR pathway negative feedback regulation |
Dynamic switch of negative feedback regulation in Drosophila Akt-TOR signaling. |
Kockel et al. |
2010 |
20585550 |
Cell line |
Kc167 |
dAkt phosphorylation |
Fluorescence |
Custom-made |
Genome-wide |
dsRNA |
Z-score |
< -2.5 OR > 2.5 |
|
GR00170-A-1 |
33835 |
|
eIF_4a |
DRSC03526 |
-6.8 |
none |
|
no |
decreased cell viability or Sanger collection sequence |
HIF-dependent transcription (1) |
Drosophila genome-wide RNAi screen identifies multiple regulators of HIF-dependent transcription in hypoxia. |
Dekanty et al. |
2010 |
20585616 |
Cell line |
S2 |
Hypoxia inducible HRE reporter |
Luminescence |
DRSC 1.0 library |
Genome-wide |
dsRNA |
Z-score |
< |
|
GR00190-A-1 |
33835 |
FBgn0001942 |
eIF-4a |
42202 |
-0.431 |
none |
|
no |
|
Adiposity regulation (1) |
Drosophila genome-wide obesity screen reveals hedgehog as a determinant of brown versus white adipose cell fate. |
Pospisilik et al. |
2010 |
20074523 |
Organism |
Hsp70-GAL4;Tub-GAL80ts |
Total fly triglyceride expression |
Colorimetrics |
np |
Genome-wide |
UAS-IR construct |
Triglyceride change |
Z-score > 1.65 after 3 screening rounds |
Additional information about the primary screen |
GR00214-A-1 |
33835 |
FBgn0001942 |
eIF-4a |
DRSC03526 |
-6.56 |
Decreased ERK phosphorylation after EGF stimulation |
10 minutes EGF stimulation |
yes |
|
RTK-Ras-ERK pathway regulation (1) |
Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling. |
Friedman et al. |
2011 |
22028469 |
Cell line |
S2R+ |
ERK phosphorylation |
Fluorescence |
np |
Genome-wide |
dsRNA |
Z-score |
> 1.5 OR < -1.5 |
|
GR00214-A-1 |
33835 |
FBgn0001942 |
eIF-4a |
DRSC03526 |
-6.04 |
Decreased ERK phosphorylation after EGF stimulation |
0 minutes EGF stimulation |
yes |
|
RTK-Ras-ERK pathway regulation (1) |
Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling. |
Friedman et al. |
2011 |
22028469 |
Cell line |
S2R+ |
ERK phosphorylation |
Fluorescence |
np |
Genome-wide |
dsRNA |
Z-score |
> 1.5 OR < -1.5 |
|
GR00214-A-2 |
33835 |
FBgn0001942 |
eIF-4a |
DRSC03526 |
1.05 |
none |
30 minutes sSpitz stimulation |
no |
|
RTK-Ras-ERK pathway regulation (2) |
Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling. |
Friedman et al. |
2011 |
22028469 |
Cell line |
Kc167 |
ERK phosphorylation |
Fluorescence |
np |
Genome-wide |
dsRNA |
Z-score |
> 1.5 OR < -1.5 |
|
GR00214-A-2 |
33835 |
FBgn0001942 |
eIF-4a |
DRSC03526 |
1.86 |
Increased ERK phosphorylation after sSpitz and EGF stimulation |
10 minutes sSpitz stimulation |
no |
|
RTK-Ras-ERK pathway regulation (2) |
Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling. |
Friedman et al. |
2011 |
22028469 |
Cell line |
Kc167 |
ERK phosphorylation |
Fluorescence |
np |
Genome-wide |
dsRNA |
Z-score |
> 1.5 OR < -1.5 |
|
GR00218-S |
33835 |
CG9075 |
eIF-4a |
AMB26468 |
0.56 |
none |
|
no |
|
Hippo pathway regulation |
Salt-inducible kinases regulate growth through the Hippo signalling pathway in Drosophila |
Wehr et al. |
2013 |
23263283 |
Cell line |
S2R+ |
Hippo pathway reporter |
Luminescence |
np |
Genome-wide |
dsRNA |
Z-score |
> 3 OR < -3 |
Author-submitted data. Primary screen |
GR00239-A-4 |
33835 |
CG9075 |
|
42202 |
np |
Lethal |
|
no |
|
Glycosylation regulation (4) |
Identification of genes required for neural-specific glycosylation using functional genomics. |
Yamamoto-Hino et al. |
2010 |
21203496 |
Tissue |
GMR-GAL4 |
Chaoptin (Chp) protein expression, alpha1,3-fucose, alpha1,6-fucose, (GlcNAc)n, GlcNAcb1-4GlcNAc and mannose Chp glycosylation and viability |
Luminescence |
np |
Selected genes |
UAS-IR construct |
Z-score |
> 3 |
|
GR00273-A-1 |
33835 |
FBgn0001942 |
eIF-4a |
DRSC03526 |
3 |
Effect on Polycomb (Pc) foci |
|
|
|
Polycomb group (PcG) proteins regulation (1) |
Identification of Regulators of the Three-Dimensional Polycomb Organization by a Microscopy-Based Genome-wide RNAi Screen |
Gonzalez et al. |
2014 |
24703951 |
Cell line |
S2 |
Pc-GFP protein localization |
Fluorescence |
DRSC |
Genome-wide and transcription factors |
dsRNA |
Visual inspection |
1 |
Additional phenotypic clustering screen available. |
GR00273-A-1 |
33835 |
FBgn0001942 |
eIF-4a |
DRSC26043 |
3 |
Effect on Polycomb (Pc) foci |
|
|
|
Polycomb group (PcG) proteins regulation (1) |
Identification of Regulators of the Three-Dimensional Polycomb Organization by a Microscopy-Based Genome-wide RNAi Screen |
Gonzalez et al. |
2014 |
24703951 |
Cell line |
S2 |
Pc-GFP protein localization |
Fluorescence |
DRSC |
Genome-wide and transcription factors |
dsRNA |
Visual inspection |
1 |
Additional phenotypic clustering screen available. |
GR00282-A |
33835 |
CG9075 |
eIF-4a |
42201 |
np |
none |
|
|
rudimentary ovaries |
piRNA pathway regulation |
The Genetic Makeup of the Drosophila piRNA Pathway |
Handler |
2013 |
23665231 |
Tissue |
tj-GAL4 |
Gypsy transposon expression |
Microscopy |
VDRC |
Selected genes |
UAS-IR construct |
Visual inspection |
np |
See comment for ovarian morphology data. Gene expression data shown in the comment derive from an ovarian stem cell line. VDRC library: KK and GD used, see phenotype data |
GR00282-A |
33835 |
CG9075 |
eIF-4a |
42202 |
np |
none |
|
|
rudimentary ovaries |
piRNA pathway regulation |
The Genetic Makeup of the Drosophila piRNA Pathway |
Handler |
2013 |
23665231 |
Tissue |
tj-GAL4 |
Gypsy transposon expression |
Microscopy |
VDRC |
Selected genes |
UAS-IR construct |
Visual inspection |
np |
See comment for ovarian morphology data. Gene expression data shown in the comment derive from an ovarian stem cell line. VDRC library: KK and GD used, see phenotype data |
GR00284-A |
33835 |
CG9075 |
eIF-4a |
100310 |
-0.01966894824966961 |
none |
|
|
|
piRNA pathway regulation |
A Transcriptome-wide RNAi Screen in the Drosophila Ovary Reveals Factors of the Germline piRNA Pathway |
Czech et al. |
2013 |
23665227 |
Tissue |
nos-GAL4 |
Transposon expression |
qPCR |
VDRC |
Selected genes |
UAS-IR construct |
Z-score |
Weak < -1.5; strong: < -2 |
KK and GD libraries used (see phenotype data) |
GR00308-A |
33835 |
CG9075 |
eIF-4a |
np |
2.33 |
Decreased cell aggregation |
|
|
|
Cadherin-mediated cell-cell adhesion |
A genome-wide screen identifies conserved protein hubs required for cadherin-mediated cell–cell adhesion |
Toret et al. |
2014 |
24446484 |
Cell line |
S2 |
Cell aggregation |
Fluorescence |
V2 RNAi library (Thermo Fisher Scientific) |
Genome-wide |
dsRNA |
Visual inspection; average of 3 replicates; 0 |
> 1.5 |
Additional secondary screen available. S2 cells stably express DE-cadherin. |
GR00311-A |
33835 |
FBgn0001942 |
eIF-4a |
DRSC03526 |
np |
Actin defect, microtubule defect, other cellular phenotype |
|
|
cell shape variable, decreased level of actin, microtubule clumps |
Actin and microtubule morphology |
Comparative RNAi screening identifies a conserved core metazoan actinome by phenotype |
Rohn et al. |
2011 |
21893601 |
Cell line |
S2R+ |
Alpha-tubulin and F-actin protein expression |
Fluorescence |
DRSC |
Genome-wide |
dsRNA |
Visual inspection |
np |
Exact phenotypes are shown in the comment section. Several genes were indicated as hits but no phenotype was provided. The screen data plus images is available at http://jcb-dataviewer.rupress.org/jcb/browse/4609/S2. |
GR00314-A |
33835 |
FBgn0001942 |
eIF-4a |
RNA004257 |
62.84 |
Decreased MAPK phosphorylation |
|
|
|
RAS-related MAPK activation |
A Functional Screen Reveals an Extensive Layer of Transcriptional and Splicing Control Underlying RAS/MAPK Signaling in Drosophila |
Ashton-Beaucage et al. |
2014 |
24643257 |
Cell line |
S2 |
MAPK phosphorylation |
Fluorescence |
Custom-made |
Genome-wide |
dsRNA |
pMAPK signal (%GFP dsRNA) |
np |
S2 cells stably expressed pMet-RasV12. See comment for hits in validation screens. Data deposited at http://www.bioinfo.iric.ca/iricrnai |
GR00323-A-1 |
33835 |
FBgn0001942 |
eIF-4a |
42202 |
np |
Lethal |
|
|
|
Drosophila eye development |
The nucleolar protein Viriato/Nol12 is required for the growth and differentiation progression activities of the Dpp pathway during Drosophila eye development |
Marinho et al. |
2013 |
23416177 |
Tissue |
eyeless-GAL4 |
Retina size |
Microscopy |
VDRC, NIG and TRiP |
Selected genes |
UAS-IR construct |
Visual inspection |
np |
Single RNAi screen; For double RNAi screen see "Viriato (Vito) interactions during eye development |
GR00323-A-2 |
33835 |
FBgn0001942 |
eIF-4a |
42202 |
np |
Lethal |
|
|
|
Viriato (Vito) interactions during eye development |
The nucleolar protein Viriato/Nol12 is required for the growth and differentiation progression activities of the Dpp pathway during Drosophila eye development |
Marinho et al. |
2013 |
23416177 |
Tissue |
eyeless-Gal4 |
Retina size |
Microscopy |
VDRC, NIG and TRiP |
Selected genes |
UAS-IR construct |
Genetic interaction score |
np |
Double RNAi screen; vito knockdown was archieved by expression of UAS-vitoRNAiKK in the female flies. For single RNAi screen see "Drosophila eye development |
GR00335-A |
33835 |
FBgn0001942 |
eIF-4a |
HMS00927 |
np |
none |
|
|
|
Germline stem cell (GSC) regulation |
A Regulatory Network of Drosophila Germline Stem Cell Self-Renewal |
Yan et al. |
2014 |
24576427 |
Tissue |
MTD-GAL4 or UAS-dcr2; nanos-GAL4 |
Spectrin and vasa protein expression |
Fluorescence |
TRiP |
Selected genes |
UAS-IR construct |
Visual inspection |
np |
More detailed phenotypes for some genes are shown in the comment. Various VALIUM vectors were used. |
|
33835 |
FBgn0001942 |
np |
np |
sp |
none |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
GR00367-S |
33835 |
CG9075 |
|
42201 |
np |
liquid clearance defect |
|
|
VDRC |
Drosophila airway maturation |
Transient junction anisotropies orient annular cell polarization in the Drosophila airway tubes |
Hosono et al. |
2015 |
26551273 |
Tissue |
btl-GAL4 |
Liquid clearance defect and viability |
Visual inspection |
VDRC, Trip, NIG |
Genome-wide |
UAS-IR construct |
Frequency |
>30% |
|
GR00379-A-1 |
33835 |
CG9075 |
|
100310 |
0.2020507530887505 |
none |
|
|
No eggs/larvae |
Stem cell maintenance |
Regulation of Ribosome Biogenesis and Protein Synthesis Controls Germline Stem Cell Differentiation |
Sanchez et al. |
2016 |
26669894 |
Organism |
nanos-GAL4 |
nos and yTub37c mRNA expression |
qPCR |
VDRC |
Selected genes |
UAS-IR construct |
Z-score |
Low: 1 - 2.5; Medium: 2.5 - 4; High: > |
Selected genes are: transcriptome-wide in female Drosophila. Additional phenotypes (egg laying/hatching) noted in the comment section. Subset libraries from VDRC (KK or GD) can be found in a column next to the comment field. |
GR00379-A-2 |
33835 |
CG9075 |
|
100310 |
np |
No germline, 100% |
|
|
Validated by independent RNAi line |
Defects in female germline |
Regulation of Ribosome Biogenesis and Protein Synthesis Controls Germline Stem Cell Differentiation |
Sanchez et al. |
2016 |
26669894 |
Organism |
nanos-GAL4 |
Vasa AND 1B1 expression |
Immunofluorescence |
VDRC |
Selected genes |
UAS-IR construct |
np |
np |
Selected genes are: transcriptome-wide in female Drosophila. Female F1 scoring high in a previous screen were considered. Phenotypes were assesed visually in 864 candidates after dissection of >100 ovarioles for each candidate. Subset libraries from VDRC (KK or GD) can be found in a column next to the comment field. |
GR00388-A |
33835 |
CG9075 |
|
GD42201 |
|
none |
|
|
|
Regulation of intestinal stem cells (ISC) |
Genome-wide RNAi Screen Identifies Networks Involved in Intestinal Stem Cell Regulation in Drosophila |
Zeng et al. |
2015 |
25704823 |
Tissue |
act5C-GAL4 |
Viability |
Visual inspection |
VDRC and BDSC |
Genome-wide |
UAS-IR construct |
np |
np |
Lethal transgenic lines identified from the primary screen were crossed with temperature-sensitive esg-GAL4 flies. Phenotypes of ISCs from the dissected midguts are shown in the "Comment" section. |
GR00388-A |
33835 |
CG9075 |
|
BL33970 |
|
Lethal |
|
|
|
Regulation of intestinal stem cells (ISC) |
Genome-wide RNAi Screen Identifies Networks Involved in Intestinal Stem Cell Regulation in Drosophila |
Zeng et al. |
2015 |
25704823 |
Tissue |
act5C-GAL4 |
Viability |
Visual inspection |
VDRC and BDSC |
Genome-wide |
UAS-IR construct |
np |
np |
Lethal transgenic lines identified from the primary screen were crossed with temperature-sensitive esg-GAL4 flies. Phenotypes of ISCs from the dissected midguts are shown in the "Comment" section. |