| GR00002-A |
35788 |
FBgn0005648 |
Pabp2 |
DRSC07501 |
7.994885844 |
Increased lipid droplet area |
|
yes |
|
Lipid storage |
COPI complex is a regulator of lipid homeostasis. |
Beller et al. |
2008 |
19067489 |
Cell line |
Kc167 |
Nuclear to lipid droplet cross-sectional area |
Fluorescence |
np |
Genome-wide |
dsRNA |
B-score |
> 2 OR < -1.7 |
Additional information about a secondary screen with non-overlaping dsRNAs |
GR00002-A |
35788 |
FBgn0005648 |
Pabp2 |
DRSC07501 |
4.017752499 |
Increased lipid droplet area |
|
yes |
|
Lipid storage |
COPI complex is a regulator of lipid homeostasis. |
Beller et al. |
2008 |
19067489 |
Cell line |
Kc167 |
Nuclear to lipid droplet cross-sectional area |
Fluorescence |
np |
Genome-wide |
dsRNA |
B-score |
> 2 OR < -1.7 |
Additional information about a secondary screen with non-overlaping dsRNAs |
GR00010-A |
35788 |
|
Pabp2 |
np |
np |
Increased poly-(A+) mRNA nuclear accumulation |
|
yes |
|
mRNA nuclear export |
Definition of global and transcript-specific mRNA export pathways in metazoans. |
Farny et al. |
2008 |
18086857 |
Cell line |
S2R+ |
Poly-(A+) mRNA nuclear accumulation |
Fluorescence |
Full genome dsRNA library |
Genome-wide |
dsRNA |
Visual inspection |
np |
|
GR00021-A-0 |
35788 |
FBgn0005648 |
|
DRSC07501 |
weak |
ERK activation reduced |
|
no |
|
ERK signaling |
A functional RNAi screen for regulators of receptor tyrosine kinase and ERK signalling. |
Friedman et al. |
2006 |
17086199 |
Cell line |
S2R+ |
ERK signaling |
Fluorescence |
DRSC |
|
dsRNA |
Weak, moderate, strong |
np |
|
GR00031-A-1 |
35788 |
|
Pabp2 |
HFA07501 |
3.4 |
Decreased cell number and viability |
|
yes |
|
Cell growth and viability (1) |
Genome-wide RNAi analysis of growth and viability in Drosophila cells. |
Boutros et al. |
2004 |
14764878 |
Cell line |
Kc167 |
Cell number and viability |
Luminescence |
Custom-made (HFA) |
Genome-wide |
dsRNA |
Z-score |
> |
|
GR00031-A-2 |
35788 |
|
Pabp2 |
HFA07501 |
3.9 |
Decreased cell number and viability |
|
no |
|
Cell growth and viability (2) |
Genome-wide RNAi analysis of growth and viability in Drosophila cells. |
Boutros et al. |
2004 |
14764878 |
Cell line |
S2R+ |
Cell number and viability |
Luminescence |
Custom-made (HFA) |
Genome-wide |
dsRNA |
Z-score |
> |
|
|
35788 |
FBgn0005648 |
Pabp2 |
DRSC07501 |
medium |
Binucleate cells with decreased viability |
|
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
GR00047-A-1 |
35788 |
FBgn0005648 |
Pabp2 |
DRSC07501 |
sp |
Decreased horseradish peroxidase protein expression |
|
no |
|
Constitutive protein secretion and Golgi organization (1) |
Functional genomics reveals genes involved in protein secretion and Golgi organization. |
Bard et al. |
2006 |
16452979 |
Cell line |
S2 |
Horseradish peroxidase protein expression |
Luminescence |
|
Genome-wide |
dsRNA |
Z-score |
< -1.5 |
|
|
35788 |
FBgn0005648 |
Pabp2 |
RE69521 |
sp |
Decreased G1 DNA content, increased cytokinesis |
|
yes |
library: DGC2 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
35788 |
FBgn0005648 |
Pabp2 |
RE74211 |
sp |
none |
|
no |
library: DGC2 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
GR00048-A-2 |
35788 |
FBgn0005648 |
Pabp2 |
np |
1.2 |
none |
|
yes |
|
Cell size and cell-cycle regulation (2) |
Identification of pathways regulating cell size and cell-cycle progression by RNAi. |
BjÓ§rklund et al. |
2006 |
16496002 |
Cell line |
S2 |
Proliferation and viability |
Colorimetrics |
|
Selected genes |
dsRNA |
MTS metabolic activity |
> 2.5 standard deviations |
Additional information about the primary screen (pooled library) and a secondary screen (number of binucleate cells) |
GR00048-A-3 |
35788 |
FBgn0005648 |
Pabp2 |
np |
469 |
none |
|
yes |
|
Cell size and cell-cycle regulation (3) |
Identification of pathways regulating cell size and cell-cycle progression by RNAi. |
BjÓ§rklund et al. |
2006 |
16496002 |
Cell line |
S2 |
Cell number |
Fluorescence |
|
Selected genes |
dsRNA |
Average cell number per field |
> 2 standard deviations |
Additional information about the primary screen (pooled library) and a secondary screen (number of binucleate cells) |
GR00051-A-1 |
35788 |
CG2163 |
Pabp2 |
np |
np |
none |
|
no |
|
Candida albicans phagocytosis (1) |
Identification of Drosophila gene products required for phagocytosis of Candida albicans. |
Stroschein-Stevenson et al. |
2006 |
16336044 |
Cell line |
S2 |
C. albicans phagocytosis, actin protein expression and DNA content |
Fluorescence |
rp |
Selected genes |
dsRNA |
Percentage cells phagocytosing C. albicans |
< |
|
GR00052-A |
35788 |
|
Pabp2 |
DRSC07501 |
np |
Decreased Ca2+ uptake after thapsigargin stimulation |
|
no |
|
Store-operated calcium influx regulation |
Genome-wide RNAi screen of Ca(2+) influx identifies genes that regulate Ca(2+) release-activated Ca(2+) channel activity. |
Zhang et al. |
2006 |
16751269 |
Cell line |
S2 |
Ca2+ uptake |
Fluorescence |
np |
Genome-wide |
dsRNA |
Z-score |
< -3 |
|
GR00062-A |
35788 |
FBgn0005648 |
Pabp2 |
np |
3 |
Decreased Ca2+ influx |
|
|
|
Ca2+ channel regulation |
CRACM1 is a plasma membrane protein essential for store-operated Ca2+ entry. |
Vig et al. |
2006 |
16645049 |
Cell line |
S2R+ |
Ca2+ influx |
Fluorescence |
np |
Genome-wide |
dsRNA |
Complex, sp |
> |
|
GR00128-A-2 |
35788 |
FBgn0005648 |
CG2163 |
DRSC34289 |
sp |
none |
|
no |
|
Combinatorial effect with methyl methanesulphonate (2) |
A network of conserved damage survival pathways revealed by a genomic RNAi screen. |
Ravi et al. |
2009 |
19543366 |
Cell line |
Kc167 |
Viability (synthetic lethal) |
Luminescence |
Version 1 |
Selected genes |
dsRNA |
rp |
rp |
|
GR00130-A |
35788 |
FBgn0005648 |
Pabp2 |
np |
<= -2 |
Decreased mutant human huntingtin aggregation |
|
no |
|
Mutant human huntingtin aggregation |
RNAi screening in Drosophila cells identifies new modifiers of mutant huntingtin aggregation. |
Doumanis et al. |
2009 |
19789644 |
Cell line |
BG2-c2 |
Nhtt(62Q)EGFP aggregate number and size |
Fluorescence |
OpenBiosystems RNAi library |
Selected genes |
dsRNA |
Z-score |
Suppressor: < |
|
GR00131-A-1 |
35788 |
|
Pabp2 |
DRSC07501 |
25 - 50 |
Altered mitochondrial Ca2+ and/or H+ levels |
|
no |
|
Mitochondrial Ca2+/H+ antiporter regulation (1) |
Genome-wide RNAi screen identifies Letm1 as a mitochondrial Ca2+/H+ antiporter. |
Jiang et al. |
2009 |
19797662 |
Cell line |
S2 |
mt-pericam protein expression (reporter of mitochondrial Ca2+ and H+ levels) |
Fluorescence |
np |
Genome-wide |
dsRNA |
Percentage inhibition |
Class I: > 75; class II: 50-75; class III: 25–50 |
|
GR00134-A-1 |
35788 |
CG2163 |
Pabp2 |
33499 |
np |
Lethal |
|
yes |
late larval |
Muscle morphogenesis and function (1) |
Systematic genetic analysis of muscle morphogenesis and function in Drosophila. |
Schnorrer et al. |
2010 |
20220848 |
Tissue |
Mef2-GAL4 |
Posture, locomotion, flight and viability |
Visual inspection |
np |
Genome-wide |
UAS-IR construct |
rp |
S19 > 0.5 |
|
GR00134-A-2 |
35788 |
CG2163 |
Pabp2 |
np |
np |
Wing posture / locomotion / ability to fly defect or lethal / semi-lethal |
|
yes |
|
Muscle morphogenesis and function (2) |
Systematic genetic analysis of muscle morphogenesis and function in Drosophila. |
Schnorrer et al. |
2010 |
20220848 |
Tissue |
Mef2-GAL4 |
Posture, locomotion, flight and viability |
Visual inspection |
Custom-made |
Selected genes |
UAS-IR construct |
rp |
S19 > 0.5 |
|
GR00134-A-3 |
35788 |
CG2163 |
Pabp2 |
33499 |
np |
Fading Z-line |
|
no |
|
Muscle morphogenesis and function (3) |
Systematic genetic analysis of muscle morphogenesis and function in Drosophila. |
Schnorrer et al. |
2010 |
20220848 |
Tissue |
Mef2-GAL4 |
ZCL0663 protein expression |
Fluorescence |
np |
Selected genes |
UAS-IR construct |
np |
np |
|
GR00135-A-1 |
35788 |
CG2163 |
Pabp2 |
33499 |
-1.17 |
none |
|
yes |
|
Heat nociception (1) |
A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionarily conserved pain gene. |
Neely et al. |
2010 |
21074052 |
Organism |
elav-GAL4 |
Noxious heat avoidance and viability |
Fly count |
np |
Genome-wide |
UAS-IR construct |
Z-score |
> 1.65 |
Additional information about secondary screens (geotactic, phototaxis, and temperature sensitivity) |
GR00138-A-1 |
35788 |
CG2163 |
|
33499 |
1 |
none |
|
no |
|
Heart development and function (1) |
A global in vivo Drosophila RNAi screen identifies NOT3 as a conserved regulator of heart function. |
Neely et al. |
2010 |
20371351 |
Tissue |
TinCΔ4 12a-Gal4 |
Viability |
Fly count |
np |
Selected genes |
UAS-IR construct |
Developmental lethality |
< |
|
GR00142-A-1 |
35788 |
CG2163 |
Pabp2 |
33499 |
0.48076923076923 |
none |
|
no |
|
Serratia marcescens infection (1) |
Genome-wide RNAi screen identifies genes involved in intestinal pathogenic bacterial infection. |
Cronin et al. |
2009 |
19520911 |
Organism |
HSP70-GAL4; TubGAL80ts |
Heat shock and viability |
Fly count |
np |
Random genes |
UAS-IR construct |
Days life time (LT50) |
< -1.5 SD OR > 2 SD |
|
GR00144-A-4 |
35788 |
CG2163 |
|
33499 |
0 |
none |
|
no |
partially lethal |
Notch pathway regulation (4) |
Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi. |
Mummery-Widmer et al. |
2009 |
19363474 |
Tissue |
pnr-GAL4 |
External sensory organ morphology and viability |
Visual inspection |
np |
Genome-wide |
UAS-IR construct |
Phenotype strength |
np |
|
GR00170-A-1 |
35788 |
|
Pabp2 |
DRSC07501 |
-3.5 |
none |
|
no |
decreased cell viability or Sanger collection sequence |
HIF-dependent transcription (1) |
Drosophila genome-wide RNAi screen identifies multiple regulators of HIF-dependent transcription in hypoxia. |
Dekanty et al. |
2010 |
20585616 |
Cell line |
S2 |
Hypoxia inducible HRE reporter |
Luminescence |
DRSC 1.0 library |
Genome-wide |
dsRNA |
Z-score |
< |
|
GR00183-A |
35788 |
FBgn0005648 |
Pabp2 |
33499 |
sp |
GFP aggregates number, GFP aggregates size, neuroblast cell shape, ganglion mother cell shorter lineages, ganglion mother cell shape, neuroblast underproliferation, lethal |
|
no |
|
Self-renewal and differentiation in neural stem cells |
Genome-wide analysis of self-renewal in Drosophila neural stem cells by transgenic RNAi. |
Neumueller et al. |
2011 |
21549331 |
Tissue |
insc-GAL4 |
Number and size of neuroblasts, ganglion mother cells, intracellular GFP aggregates and viability |
Fluorescence |
np |
Genome-wide |
UAS-IR construct |
Phenotype strength |
> 1 |
Additional information about a secondary screen (KK library) |
GR00185-A |
35788 |
CG2163 |
PABP2 |
np |
87 |
none |
|
no |
20 min heat shock |
Pol II elongation |
Spt6 enhances the elongation rate of RNA polymerase II in vivo. |
Ardehali et al. |
2009 |
19279664 |
Cell line |
S2 |
Hsp70 mRNA expression |
Real-time qPCR |
Custom-made |
Transcription factors |
dsRNA |
Percentage |
< |
|
GR00189-A-1 |
35788 |
FBgn0005648 |
Pabp2 |
BKN22807 |
np |
Downregulation of Notch pathway |
|
yes |
|
Notch pathway regulation (1) |
A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network. |
Saj et al. |
2010 |
20493818 |
Cell line |
S2 |
Notch pathway reporter |
Luminescence |
BKN |
Genome-wide |
dsRNA |
Complex, sp |
Complex criteria |
|
GR00189-A-2 |
35788 |
FBgn0005648 |
Pabp2 |
33499 |
sp |
Downregulation of Notch pathway; adult wing margin: notches |
|
no |
C96-GAL4 |
Notch pathway regulation (2) |
A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network. |
Saj et al. |
2010 |
20493818 |
Tissue |
en-GAL4, C96-GAL4 and vg-GAL4 |
Notch pathway reporter, wing imaginal discs morphology, adult wing morphology and viability |
Fluorescence and visual inspection |
Notch pathway component enriched RNAi library |
Selected genes |
UAS-IR construct |
Phenotype strength |
np |
|
GR00189-A-2 |
35788 |
FBgn0005648 |
Pabp2 |
33499 |
very strong |
Lethal |
|
no |
en-GAL4; final gene scoring: downregulation of Notch pathway |
Notch pathway regulation (2) |
A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network. |
Saj et al. |
2010 |
20493818 |
Tissue |
en-GAL4, C96-GAL4 and vg-GAL4 |
Notch pathway reporter, wing imaginal discs morphology, adult wing morphology and viability |
Fluorescence and visual inspection |
Notch pathway component enriched RNAi library |
Selected genes |
UAS-IR construct |
Phenotype strength |
np |
|
GR00190-A-1 |
35788 |
FBgn0005648 |
Pabp2 |
33499 |
0.254 |
none |
|
no |
|
Adiposity regulation (1) |
Drosophila genome-wide obesity screen reveals hedgehog as a determinant of brown versus white adipose cell fate. |
Pospisilik et al. |
2010 |
20074523 |
Organism |
Hsp70-GAL4;Tub-GAL80ts |
Total fly triglyceride expression |
Colorimetrics |
np |
Genome-wide |
UAS-IR construct |
Triglyceride change |
Z-score > 1.65 after 3 screening rounds |
Additional information about the primary screen |
GR00214-A-1 |
35788 |
FBgn0005648 |
Pabp2 |
DRSC07501 |
-1.74 |
Decreased ERK phosphorylation after EGF stimulation |
10 minutes EGF stimulation |
yes |
|
RTK-Ras-ERK pathway regulation (1) |
Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling. |
Friedman et al. |
2011 |
22028469 |
Cell line |
S2R+ |
ERK phosphorylation |
Fluorescence |
np |
Genome-wide |
dsRNA |
Z-score |
> 1.5 OR < -1.5 |
|
GR00214-A-1 |
35788 |
FBgn0005648 |
Pabp2 |
DRSC07501 |
-0.1 |
none |
0 minutes EGF stimulation |
yes |
|
RTK-Ras-ERK pathway regulation (1) |
Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling. |
Friedman et al. |
2011 |
22028469 |
Cell line |
S2R+ |
ERK phosphorylation |
Fluorescence |
np |
Genome-wide |
dsRNA |
Z-score |
> 1.5 OR < -1.5 |
|
GR00214-A-2 |
35788 |
FBgn0005648 |
Pabp2 |
DRSC07501 |
2.51 |
Increased ERK phosphorylation after sSpitz and EGF stimulation |
30 minutes sSpitz stimulation |
no |
|
RTK-Ras-ERK pathway regulation (2) |
Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling. |
Friedman et al. |
2011 |
22028469 |
Cell line |
Kc167 |
ERK phosphorylation |
Fluorescence |
np |
Genome-wide |
dsRNA |
Z-score |
> 1.5 OR < -1.5 |
|
GR00214-A-2 |
35788 |
FBgn0005648 |
Pabp2 |
DRSC07501 |
1.68 |
Increased ERK phosphorylation after sSpitz and EGF stimulation |
10 minutes sSpitz stimulation |
no |
|
RTK-Ras-ERK pathway regulation (2) |
Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling. |
Friedman et al. |
2011 |
22028469 |
Cell line |
Kc167 |
ERK phosphorylation |
Fluorescence |
np |
Genome-wide |
dsRNA |
Z-score |
> 1.5 OR < -1.5 |
|
GR00218-S |
35788 |
CG2163 |
Pabp2 |
AMB17980 |
-2.57 |
none |
|
no |
|
Hippo pathway regulation |
Salt-inducible kinases regulate growth through the Hippo signalling pathway in Drosophila |
Wehr et al. |
2013 |
23263283 |
Cell line |
S2R+ |
Hippo pathway reporter |
Luminescence |
np |
Genome-wide |
dsRNA |
Z-score |
> 3 OR < -3 |
Author-submitted data. Primary screen |
GR00239-A-1 |
35788 |
CG2163 |
Pabp2 |
2163R |
sp |
Decreased alpha1,3-fucose Chp glycosylation |
|
yes |
|
Glycosylation regulation (1) |
Identification of genes required for neural-specific glycosylation using functional genomics. |
Yamamoto-Hino et al. |
2010 |
21203496 |
Tissue |
GMR-GAL4 |
Chaoptin (Chp) protein expression, alpha1,3-fucose, alpha1,6-fucose, (GlcNAc)n, GlcNAcb1-4GlcNAc and mannose Chp glycosylation and viability |
Luminescence |
np |
Selected genes |
UAS-IR construct |
Z-score |
> 3 |
|
GR00239-A-2 |
35788 |
CG2163 |
Pabp2 |
2163R |
np |
Effect on Chp glycosylation |
|
yes |
rank 1 |
Glycosylation regulation (2) |
Identification of genes required for neural-specific glycosylation using functional genomics. |
Yamamoto-Hino et al. |
2010 |
21203496 |
Tissue |
GMR-GAL4 |
Chaoptin (Chp) protein expression and alpha1,3-fucose, alpha1,6-fucose, (GlcNAc)n, GlcNAcb1-4GlcNAc and mannose Chp glycosylation |
Luminescence |
np |
Selected genes |
UAS-IR construct |
p-value |
< 0.005 |
|
GR00239-A-3 |
35788 |
CG2163 |
Pabp2 |
2163G |
np |
Effect on Chp glycosylation |
|
yes |
library: custom-made |
Glycosylation regulation (3) |
Identification of genes required for neural-specific glycosylation using functional genomics. |
Yamamoto-Hino et al. |
2010 |
21203496 |
Tissue |
GMR-GAL4 |
Chaoptin (Chp) protein expression and alpha1,3-fucose, alpha1,6-fucose, (GlcNAc)n, GlcNAcb1-4GlcNAc and mannose Chp glycosylation |
Luminescence |
np |
Selected genes |
UAS-IR construct |
p-value |
< 0.05 |
|
GR00273-A-1 |
35788 |
FBgn0005648 |
Pabp2 |
DRSC07501 |
3 |
Effect on Polycomb (Pc) foci |
|
|
|
Polycomb group (PcG) proteins regulation (1) |
Identification of Regulators of the Three-Dimensional Polycomb Organization by a Microscopy-Based Genome-wide RNAi Screen |
Gonzalez et al. |
2014 |
24703951 |
Cell line |
S2 |
Pc-GFP protein localization |
Fluorescence |
DRSC |
Genome-wide and transcription factors |
dsRNA |
Visual inspection |
1 |
Additional phenotypic clustering screen available. |
GR00282-A |
35788 |
CG2163 |
Pabp2 |
33499 |
np |
none |
|
|
rudimentary ovaries |
piRNA pathway regulation |
The Genetic Makeup of the Drosophila piRNA Pathway |
Handler |
2013 |
23665231 |
Tissue |
tj-GAL4 |
Gypsy transposon expression |
Microscopy |
VDRC |
Selected genes |
UAS-IR construct |
Visual inspection |
np |
See comment for ovarian morphology data. Gene expression data shown in the comment derive from an ovarian stem cell line. VDRC library: KK and GD used, see phenotype data |
GR00282-A |
35788 |
CG2163 |
Pabp2 |
106466 |
np |
none |
|
|
|
piRNA pathway regulation |
The Genetic Makeup of the Drosophila piRNA Pathway |
Handler |
2013 |
23665231 |
Tissue |
tj-GAL4 |
Gypsy transposon expression |
Microscopy |
VDRC |
Selected genes |
UAS-IR construct |
Visual inspection |
np |
See comment for ovarian morphology data. Gene expression data shown in the comment derive from an ovarian stem cell line. VDRC library: KK and GD used, see phenotype data |
GR00284-A |
35788 |
CG2163 |
Pabp2 |
106466 |
-1.8515442164384857 |
Weakly increased transposon expression |
|
|
|
piRNA pathway regulation |
A Transcriptome-wide RNAi Screen in the Drosophila Ovary Reveals Factors of the Germline piRNA Pathway |
Czech et al. |
2013 |
23665227 |
Tissue |
nos-GAL4 |
Transposon expression |
qPCR |
VDRC |
Selected genes |
UAS-IR construct |
Z-score |
Weak < -1.5; strong: < -2 |
KK and GD libraries used (see phenotype data) |
GR00308-A |
35788 |
CG2163 |
Pabp2 |
np |
3.67 |
Decreased cell aggregation |
|
|
|
Cadherin-mediated cell-cell adhesion |
A genome-wide screen identifies conserved protein hubs required for cadherin-mediated cell–cell adhesion |
Toret et al. |
2014 |
24446484 |
Cell line |
S2 |
Cell aggregation |
Fluorescence |
V2 RNAi library (Thermo Fisher Scientific) |
Genome-wide |
dsRNA |
Visual inspection; average of 3 replicates; 0 |
> 1.5 |
Additional secondary screen available. S2 cells stably express DE-cadherin. |
GR00308-A |
35788 |
CG2163 |
RpS3A |
np |
3 |
Decreased cell aggregation |
|
|
|
Cadherin-mediated cell-cell adhesion |
A genome-wide screen identifies conserved protein hubs required for cadherin-mediated cell–cell adhesion |
Toret et al. |
2014 |
24446484 |
Cell line |
S2 |
Cell aggregation |
Fluorescence |
V2 RNAi library (Thermo Fisher Scientific) |
Genome-wide |
dsRNA |
Visual inspection; average of 3 replicates; 0 |
> 1.5 |
Additional secondary screen available. S2 cells stably express DE-cadherin. |
GR00311-A |
35788 |
FBgn0005648 |
Pabp2 |
DRSC07501 |
np |
Actin defect, other cellular phenotype |
|
|
cell shape variable, decreased level of actin, decreased cell number, loss of cell monolayer |
Actin and microtubule morphology |
Comparative RNAi screening identifies a conserved core metazoan actinome by phenotype |
Rohn et al. |
2011 |
21893601 |
Cell line |
S2R+ |
Alpha-tubulin and F-actin protein expression |
Fluorescence |
DRSC |
Genome-wide |
dsRNA |
Visual inspection |
np |
Exact phenotypes are shown in the comment section. Several genes were indicated as hits but no phenotype was provided. The screen data plus images is available at http://jcb-dataviewer.rupress.org/jcb/browse/4609/S2. |
GR00315-A-1 |
35788 |
CG2163 |
Pabp2 |
106466 |
np |
Effect on follicular epithelium morphology |
|
|
further phenotype data in classification screen |
Follicular epithelium development (1) |
A genome-scale in vivo RNAi analysis of epithelial development in Drosophila identifies new proliferation domains outside of the stem cell niche |
Berns et al. |
2014 |
24762813 |
Tissue |
Escargot-GAL4 and GR1-GAL4, GR1-GAL4, traffic jam-GAL4 |
Follicular epithelium morphology |
Fluorescence |
VDRC KK |
Random genes |
UAS-IR construct |
Visual inspection |
np |
Further classification screen available, see follicular epithelium development (2). |
GR00315-A-2 |
35788 |
CG2163 |
Pabp2 |
106466 |
np |
Defect in formation phase |
|
|
|
Follicular epithelium development (2) |
A genome-scale in vivo RNAi analysis of epithelial development in Drosophila identifies new proliferation domains outside of the stem cell niche |
Berns et al. |
2014 |
24762813 |
Tissue |
traffic jam-GAL4 |
Follicular epithelium morphology |
Fluorescence |
VDRC KK |
Selected genes |
UAS-IR construct |
Visual inspection |
np |
For more detailed phenotypes sp. Cell morphology was analized by aPKC and DLG protein expression. Additional validation screens available. |
GR00326-A |
35788 |
FBgn0005648 |
Pabp2 |
2163 |
np |
none |
|
|
|
Synapse formation and maintenance |
A large-scale RNAi screen identifies functional classes of genes shaping synaptic development and maintenance |
Valakh et al. |
2012 |
22542760 |
Tissue |
Elav-Gal4 |
Neuromuscular junction morphology |
Fluorescence |
VDRC |
Selected genes |
UAS-IR construct |
Visual inspection |
np |
For further phenotype explanations sp. |
|
35788 |
FBgn0005648 |
np |
np |
-2.73 |
Increased transposon expression |
|
|
fold change: 4.94 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
35788 |
FBgn0005648 |
np |
np |
sp |
none |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
GR00339-A-2 |
35788 |
FBgn0005648 |
Pabp2 |
106466 |
0 |
none |
|
|
|
piRNA pathway regulation (2) |
A Genome-wide RNAi Screen Draws a Genetic Framework for Transposon Control and Primary piRNA Biogenesis in Drosophila |
Muerdter et al. |
2013 |
23665228 |
Tissue |
traffic jam GAL4 |
Gypsy and ZAM transposon expression |
qPCR |
VDRC (GD, KK) and TRiP |
Selected genes |
UAS-IR construct |
Fold change |
> |
Following transposons were used for scoring: Gypsy for KK and ZAM for GD RNAi lines. TRIP reagents als TRIP_11111 dargestellt, Suchbarkeit? Developmental defect: wurden nicht gemessen, passt np als Score? |
GR00367-S |
35788 |
CG2163 |
|
33499 |
np |
liquid clearance defect |
|
|
VDRC |
Drosophila airway maturation |
Transient junction anisotropies orient annular cell polarization in the Drosophila airway tubes |
Hosono et al. |
2015 |
26551273 |
Tissue |
btl-GAL4 |
Liquid clearance defect and viability |
Visual inspection |
VDRC, Trip, NIG |
Genome-wide |
UAS-IR construct |
Frequency |
>30% |
|
GR00379-A-1 |
35788 |
CG2163 |
|
106466 |
6.689819714045745 |
High decrease in nos and yTub37c expression |
|
|
Reduced eggs/larvae |
Stem cell maintenance |
Regulation of Ribosome Biogenesis and Protein Synthesis Controls Germline Stem Cell Differentiation |
Sanchez et al. |
2016 |
26669894 |
Organism |
nanos-GAL4 |
nos and yTub37c mRNA expression |
qPCR |
VDRC |
Selected genes |
UAS-IR construct |
Z-score |
Low: 1 - 2.5; Medium: 2.5 - 4; High: > |
Selected genes are: transcriptome-wide in female Drosophila. Additional phenotypes (egg laying/hatching) noted in the comment section. Subset libraries from VDRC (KK or GD) can be found in a column next to the comment field. |
GR00379-A-2 |
35788 |
CG2163 |
|
106466 |
np |
Germarium defects, 100% |
|
|
|
Defects in female germline |
Regulation of Ribosome Biogenesis and Protein Synthesis Controls Germline Stem Cell Differentiation |
Sanchez et al. |
2016 |
26669894 |
Organism |
nanos-GAL4 |
Vasa AND 1B1 expression |
Immunofluorescence |
VDRC |
Selected genes |
UAS-IR construct |
np |
np |
Selected genes are: transcriptome-wide in female Drosophila. Female F1 scoring high in a previous screen were considered. Phenotypes were assesed visually in 864 candidates after dissection of >100 ovarioles for each candidate. Subset libraries from VDRC (KK or GD) can be found in a column next to the comment field. |
GR00388-A |
35788 |
CG2163 |
|
GD33499 |
|
Lethal |
|
|
|
Regulation of intestinal stem cells (ISC) |
Genome-wide RNAi Screen Identifies Networks Involved in Intestinal Stem Cell Regulation in Drosophila |
Zeng et al. |
2015 |
25704823 |
Tissue |
act5C-GAL4 |
Viability |
Visual inspection |
VDRC and BDSC |
Genome-wide |
UAS-IR construct |
np |
np |
Lethal transgenic lines identified from the primary screen were crossed with temperature-sensitive esg-GAL4 flies. Phenotypes of ISCs from the dissected midguts are shown in the "Comment" section. |