| GR00002-A |
40155 |
FBgn0015234 |
HLH106 |
DRSC11182 |
-0.799555048 |
none |
|
no |
|
Lipid storage |
COPI complex is a regulator of lipid homeostasis. |
Beller et al. |
2008 |
19067489 |
Cell line |
Kc167 |
Nuclear to lipid droplet cross-sectional area |
Fluorescence |
np |
Genome-wide |
dsRNA |
B-score |
> 2 OR < -1.7 |
Additional information about a secondary screen with non-overlaping dsRNAs |
GR00002-A |
40155 |
FBgn0015234 |
HLH106 |
DRSC11182 |
1.226368846 |
none |
|
no |
|
Lipid storage |
COPI complex is a regulator of lipid homeostasis. |
Beller et al. |
2008 |
19067489 |
Cell line |
Kc167 |
Nuclear to lipid droplet cross-sectional area |
Fluorescence |
np |
Genome-wide |
dsRNA |
B-score |
> 2 OR < -1.7 |
Additional information about a secondary screen with non-overlaping dsRNAs |
GR00004-A-0 |
40155 |
|
HLH106 |
DRSC11182 |
1.3 |
siRNA reporter upregulated |
|
no |
|
Drosophila small RNA pathways |
Comparative analysis of argonaute-dependent small RNA pathways in Drosophila. |
Zhou et al. |
2008 |
19026789 |
Cell line |
S2 |
miRNA and siRNA pathway activity |
Dual luciferase |
DRSC |
|
dsRNA |
Fold change endo-siRNA reporter |
1.5/0.6 |
|
GR00013-A |
40155 |
CG8522 |
HLH106 |
np |
np |
Decreased Chlamydia caviae infection |
|
no |
|
Chlamydia caviae infection |
RNAi screen in Drosophila cells reveals the involvement of the Tom complex in Chlamydia infection. |
Derre et al. |
2007 |
17967059 |
Cell line |
SL2 |
Chlamydia MOMP and LPS expression and DNA content |
Fluorescence |
np |
Genome-wide |
dsRNA |
Visual inspection |
np |
Additional information about secondary screens |
GR00024-A |
40155 |
|
CG8522 |
np |
10 |
Cell death |
|
|
Intracellular S. aureus: 3 % |
Phagocytosis of bacteria |
Functional genomic analysis of phagocytosis and identification of a Drosophila receptor for E. coli. |
Raemet et al. |
2002 |
11912489 |
Cell line |
S2 |
Intracellular bacteria |
Flow cytometry |
Custom-made |
Selected genes |
dsRNA |
Percentage |
< |
Phagocytosis of E.Coli and S.aureus was investigated in this screen. The scores provided derive from infection with E.Coli, for S.aureus scores see comment section. |
GR00031-A-1 |
40155 |
|
HLH106 |
HFA11182 |
4.3 |
Decreased cell number and viability |
|
yes |
|
Cell growth and viability (1) |
Genome-wide RNAi analysis of growth and viability in Drosophila cells. |
Boutros et al. |
2004 |
14764878 |
Cell line |
Kc167 |
Cell number and viability |
Luminescence |
Custom-made (HFA) |
Genome-wide |
dsRNA |
Z-score |
> |
|
GR00031-A-2 |
40155 |
|
HLH106 |
HFA11182 |
2.3 |
none |
|
no |
|
Cell growth and viability (2) |
Genome-wide RNAi analysis of growth and viability in Drosophila cells. |
Boutros et al. |
2004 |
14764878 |
Cell line |
S2R+ |
Cell number and viability |
Luminescence |
Custom-made (HFA) |
Genome-wide |
dsRNA |
Z-score |
> |
|
GR00036-A |
40155 |
CG8522 |
HLH106 |
DRSC11182 |
strong |
Decreased GFP protein expression |
|
yes |
decreased intracellular infection |
Intracellular Listeria monocytogenes infection |
Genome-wide RNAi screen for host factors required for intracellular bacterial infection. |
Agaisse et al. |
2005 |
16020693 |
Cell line |
SL2 |
GFP protein expression |
Fluorescence |
DRSC |
Genome-wide |
dsRNA |
Visual inspection |
np |
|
GR00046-A-1 |
40155 |
FBgn0015234 |
HLH106 |
DRSC11182 |
8.2 |
Decreased M. fortuitum intracellular infection |
measurement after 3 days |
yes |
|
Mycobacterial infection (1) - M. fortuitum infection |
Drosophila RNAi screen reveals CD36 family member required for mycobacterial infection. |
Philips et al. |
2005 |
16020694 |
Cell line |
S2 |
map24::GFP and map49::GFP protein expression |
Fluorescence |
np |
Genome-wide |
dsRNA |
Z-score |
> |
|
GR00046-A-2 |
40155 |
FBgn0015234 |
HLH106 |
DRSC11182 |
np |
Decreased E. coli phagocytosis |
|
no |
|
Mycobacterial infection (2) - E. coli phagocytosis |
Drosophila RNAi screen reveals CD36 family member required for mycobacterial infection. |
Philips et al. |
2005 |
16020694 |
Cell line |
S2 |
Intracellular FITC-E. coli uptake |
Fluorescence |
np |
Selected genes |
dsRNA |
p-value |
< 0.01 |
|
GR00047-A-1 |
40155 |
FBgn0015234 |
HLH106 |
DRSC11182 |
sp |
Decreased horseradish peroxidase protein expression |
|
no |
|
Constitutive protein secretion and Golgi organization (1) |
Functional genomics reveals genes involved in protein secretion and Golgi organization. |
Bard et al. |
2006 |
16452979 |
Cell line |
S2 |
Horseradish peroxidase protein expression |
Luminescence |
|
Genome-wide |
dsRNA |
Z-score |
< -1.5 |
|
|
40155 |
FBgn0015234 |
HLH106 |
LP12374 |
sp |
Decreased G1 DNA content, decreased viability, increased cytokinesis |
|
yes |
library: DGC2 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
GR00048-A-2 |
40155 |
FBgn0015234 |
HLH106 |
np |
1.043 |
none |
|
yes |
|
Cell size and cell-cycle regulation (2) |
Identification of pathways regulating cell size and cell-cycle progression by RNAi. |
BjÓ§rklund et al. |
2006 |
16496002 |
Cell line |
S2 |
Proliferation and viability |
Colorimetrics |
|
Selected genes |
dsRNA |
MTS metabolic activity |
> 2.5 standard deviations |
Additional information about the primary screen (pooled library) and a secondary screen (number of binucleate cells) |
GR00048-A-3 |
40155 |
FBgn0015234 |
HLH106 |
np |
276 |
Decreased cell number |
|
yes |
|
Cell size and cell-cycle regulation (3) |
Identification of pathways regulating cell size and cell-cycle progression by RNAi. |
BjÓ§rklund et al. |
2006 |
16496002 |
Cell line |
S2 |
Cell number |
Fluorescence |
|
Selected genes |
dsRNA |
Average cell number per field |
> 2 standard deviations |
Additional information about the primary screen (pooled library) and a secondary screen (number of binucleate cells) |
GR00048-A-4 |
40155 |
FBgn0015234 |
HLH106 |
np |
below threshold |
none |
|
no |
low cell number |
Cell size and cell-cycle regulation (4) |
Identification of pathways regulating cell size and cell-cycle progression by RNAi. |
BjÓ§rklund et al. |
2006 |
16496002 |
Cell line |
S2 |
Number of mitotic cells |
Fluorescence |
|
Selected genes |
dsRNA |
Percentage |
Visual inspection |
Additional information about the primary screen (pooled library) and a secondary screen (number of binucleate cells) |
GR00051-A-1 |
40155 |
CG8522 |
HLH106 |
np |
np |
Decreased Candida albicans phagocytosis |
|
yes |
validated (44 % cells phagocytosing) |
Candida albicans phagocytosis (1) |
Identification of Drosophila gene products required for phagocytosis of Candida albicans. |
Stroschein-Stevenson et al. |
2006 |
16336044 |
Cell line |
S2 |
C. albicans phagocytosis, actin protein expression and DNA content |
Fluorescence |
rp |
Selected genes |
dsRNA |
Percentage cells phagocytosing C. albicans |
< |
|
GR00051-A-2 |
40155 |
CG8522 |
HLH106 |
np |
44 |
Decreased Escherichia coli phagocytosis |
|
yes |
|
Candida albicans phagocytosis (2) |
Identification of Drosophila gene products required for phagocytosis of Candida albicans. |
Stroschein-Stevenson et al. |
2006 |
16336044 |
Cell line |
S2 |
Escherichia coli phagocytosis, actin protein expression and DNA content |
Fluorescence |
rp |
Selected genes |
dsRNA |
Percentage cells phagocytosing E. coli |
< |
|
GR00051-A-3 |
40155 |
CG8522 |
HLH106 |
np |
45 |
none |
|
yes |
|
Candida albicans phagocytosis (3) |
Identification of Drosophila gene products required for phagocytosis of Candida albicans. |
Stroschein-Stevenson et al. |
2006 |
16336044 |
Cell line |
S2 |
Latex beads phagocytosis, actin protein expression and DNA content |
Fluorescence |
rp |
Selected genes |
dsRNA |
Percentage cells phagocytosing latex beads |
< |
|
GR00065-A |
40155 |
CG8522 |
HLH106 |
HLH106 |
np |
none |
|
no |
|
Dendrite pattern formation |
Genome-wide analyses identify transcription factors required for proper morphogenesis of Drosophila sensory neuron dendrites. |
Parrish et al. |
2006 |
16547170 |
Tissue |
GAL4221 |
mCD8 protein expression |
Fluorescence |
Custom-made |
Transcription factors |
UAS-IR construct |
np |
Phenotypes in multiple blind tests |
Additional information about secondary screens |
GR00083-A |
40155 |
CG8522 |
HLH106 |
np |
15.67 |
Decreased Brucella melitensis infection |
|
no |
|
Brucella melitensis infection |
RNAi screen of endoplasmic reticulum-associated host factors reveals a role for IRE1alpha in supporting Brucella replication. |
Qin et al. |
2008 |
18654626 |
Cell line |
S2 |
Intracellular bacterial GFP protein expression |
Fluorescence |
Drosophila RNAi Library Release 1.0 |
Selected genes |
dsRNA |
Relative infection |
> 2 standard deviations below untreated control |
Additional information about secondary screens (gentamicin protection assays) |
GR00090-A-0 |
40155 |
FBgn0261283 |
CG8522 |
np |
strong |
Fewer lipid droplets, larger size |
|
no |
|
Lipid storage |
Functional genomic screen reveals genes involved in lipid-droplet formation and utilization. |
Guo et al. |
2008 |
18408709 |
Cell line |
S2 |
Lipid droplet staining |
High content (microscopy) |
OpenBiosystems |
|
dsRNA |
Visual inspection |
np |
|
GR00130-A |
40155 |
FBgn0015234 |
HLH106 |
np |
<= -2 |
Decreased mutant human huntingtin aggregation |
|
no |
|
Mutant human huntingtin aggregation |
RNAi screening in Drosophila cells identifies new modifiers of mutant huntingtin aggregation. |
Doumanis et al. |
2009 |
19789644 |
Cell line |
BG2-c2 |
Nhtt(62Q)EGFP aggregate number and size |
Fluorescence |
OpenBiosystems RNAi library |
Selected genes |
dsRNA |
Z-score |
Suppressor: < |
|
GR00131-A-1 |
40155 |
|
HLH106 |
DRSC11182 |
50 - 75 |
Altered mitochondrial Ca2+ and/or H+ levels |
|
no |
|
Mitochondrial Ca2+/H+ antiporter regulation (1) |
Genome-wide RNAi screen identifies Letm1 as a mitochondrial Ca2+/H+ antiporter. |
Jiang et al. |
2009 |
19797662 |
Cell line |
S2 |
mt-pericam protein expression (reporter of mitochondrial Ca2+ and H+ levels) |
Fluorescence |
np |
Genome-wide |
dsRNA |
Percentage inhibition |
Class I: > 75; class II: 50-75; class III: 25–50 |
|
GR00134-A-1 |
40155 |
CG8522 |
HLH106 |
37640 |
np |
none |
|
no |
|
Muscle morphogenesis and function (1) |
Systematic genetic analysis of muscle morphogenesis and function in Drosophila. |
Schnorrer et al. |
2010 |
20220848 |
Tissue |
Mef2-GAL4 |
Posture, locomotion, flight and viability |
Visual inspection |
np |
Genome-wide |
UAS-IR construct |
rp |
S19 > 0.5 |
|
GR00134-A-1 |
40155 |
CG8522 |
HLH106 |
37641 |
np |
none |
|
no |
|
Muscle morphogenesis and function (1) |
Systematic genetic analysis of muscle morphogenesis and function in Drosophila. |
Schnorrer et al. |
2010 |
20220848 |
Tissue |
Mef2-GAL4 |
Posture, locomotion, flight and viability |
Visual inspection |
np |
Genome-wide |
UAS-IR construct |
rp |
S19 > 0.5 |
|
GR00135-A-1 |
40155 |
CG8522 |
HLH106 |
37640 |
-1.17 |
none |
|
yes |
|
Heat nociception (1) |
A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionarily conserved pain gene. |
Neely et al. |
2010 |
21074052 |
Organism |
elav-GAL4 |
Noxious heat avoidance and viability |
Fly count |
np |
Genome-wide |
UAS-IR construct |
Z-score |
> 1.65 |
Additional information about secondary screens (geotactic, phototaxis, and temperature sensitivity) |
GR00135-A-1 |
40155 |
CG8522 |
HLH106 |
37641 |
-1.17 |
none |
|
yes |
|
Heat nociception (1) |
A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionarily conserved pain gene. |
Neely et al. |
2010 |
21074052 |
Organism |
elav-GAL4 |
Noxious heat avoidance and viability |
Fly count |
np |
Genome-wide |
UAS-IR construct |
Z-score |
> 1.65 |
Additional information about secondary screens (geotactic, phototaxis, and temperature sensitivity) |
GR00138-A-1 |
40155 |
CG8522 |
|
37640 |
1 |
none |
|
no |
|
Heart development and function (1) |
A global in vivo Drosophila RNAi screen identifies NOT3 as a conserved regulator of heart function. |
Neely et al. |
2010 |
20371351 |
Tissue |
TinCΔ4 12a-Gal4 |
Viability |
Fly count |
np |
Selected genes |
UAS-IR construct |
Developmental lethality |
< |
|
GR00138-A-1 |
40155 |
CG8522 |
|
37641 |
1 |
none |
|
no |
|
Heart development and function (1) |
A global in vivo Drosophila RNAi screen identifies NOT3 as a conserved regulator of heart function. |
Neely et al. |
2010 |
20371351 |
Tissue |
TinCΔ4 12a-Gal4 |
Viability |
Fly count |
np |
Selected genes |
UAS-IR construct |
Developmental lethality |
< |
|
GR00139-A |
40155 |
|
HLH106 |
37640 |
sp |
Lethal |
|
no |
|
Fly viability and adult morphology |
A genome-wide transgenic RNAi library for conditional gene inactivation in Drosophila. |
Dietzl et al. |
2007 |
17625558 |
Organism |
Act5C-GAL4 |
Adult morphology and viability |
Visual inspection |
Custom-made |
Selected and random genes |
UAS-IR construct |
Phenotype strength |
np |
Additional information about secondary screens (MS1096-GAL4, ey-GAL4, GMR-GAL4 and pnr-GAL4) |
GR00142-A-1 |
40155 |
CG8522 |
HLH106 |
37641 |
0.267605633802816 |
none |
|
no |
|
Serratia marcescens infection (1) |
Genome-wide RNAi screen identifies genes involved in intestinal pathogenic bacterial infection. |
Cronin et al. |
2009 |
19520911 |
Organism |
HSP70-GAL4; TubGAL80ts |
Heat shock and viability |
Fly count |
np |
Random genes |
UAS-IR construct |
Days life time (LT50) |
< -1.5 SD OR > 2 SD |
|
GR00144-A-4 |
40155 |
CG8522 |
|
37640 |
0 |
none |
|
no |
not lethal |
Notch pathway regulation (4) |
Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi. |
Mummery-Widmer et al. |
2009 |
19363474 |
Tissue |
pnr-GAL4 |
External sensory organ morphology and viability |
Visual inspection |
np |
Genome-wide |
UAS-IR construct |
Phenotype strength |
np |
|
GR00144-A-4 |
40155 |
CG8522 |
|
37641 |
0 |
none |
|
no |
not lethal |
Notch pathway regulation (4) |
Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi. |
Mummery-Widmer et al. |
2009 |
19363474 |
Tissue |
pnr-GAL4 |
External sensory organ morphology and viability |
Visual inspection |
np |
Genome-wide |
UAS-IR construct |
Phenotype strength |
np |
|
GR00150-A |
40155 |
|
HLH106 |
np |
sp |
Decreased proteasomal degradation over two consecutive days |
|
no |
|
Ubiquitin/proteasome system regulation |
Basic leucine zipper protein Cnc-C is a substrate and transcriptional regulator of the Drosophila 26S proteasome. |
Grimberg et al. |
2011 |
21149573 |
Cell line |
S2 |
UbG76V proteasomal reporter |
Fluorescence |
Drosophila Transcription Factor RNAi Sub-Library (DRSC TRXN) |
Transcription factors |
siRNA |
UbG76V-GFP stabilization |
Independent observations |
|
GR00170-A-1 |
40155 |
|
HLH106 |
DRSC11182 |
-2.9 |
none |
|
no |
decreased cell viability or Sanger collection sequence |
HIF-dependent transcription (1) |
Drosophila genome-wide RNAi screen identifies multiple regulators of HIF-dependent transcription in hypoxia. |
Dekanty et al. |
2010 |
20585616 |
Cell line |
S2 |
Hypoxia inducible HRE reporter |
Luminescence |
DRSC 1.0 library |
Genome-wide |
dsRNA |
Z-score |
< |
|
GR00190-A-1 |
40155 |
FBgn0015234 |
HLH106 |
37641 |
-0.134 |
none |
|
no |
|
Adiposity regulation (1) |
Drosophila genome-wide obesity screen reveals hedgehog as a determinant of brown versus white adipose cell fate. |
Pospisilik et al. |
2010 |
20074523 |
Organism |
Hsp70-GAL4;Tub-GAL80ts |
Total fly triglyceride expression |
Colorimetrics |
np |
Genome-wide |
UAS-IR construct |
Triglyceride change |
Z-score > 1.65 after 3 screening rounds |
Additional information about the primary screen |
GR00194-A |
40155 |
CG8522 |
HLH106 |
np |
sp |
Increased actin protein expression at cell perimeter on Con A surface |
|
yes |
actin/area: top 40, FFT: bottom 40, No. of corners: bottom 40 |
S2 cell spreading |
A whole genome RNAi screen of Drosophila S2 cell spreading performed using automated computational image analysis. |
D'Ambrosio and Vale |
2010 |
21041442 |
Cell line |
S2U |
alpha-tubulin and actin protein expression |
Fluorescence |
V2 RNAi library |
Genome-wide |
dsRNA |
Complex, sp |
Complex criteria |
|
GR00214-A-1 |
40155 |
FBgn0261283 |
HLH106 |
DRSC11182 |
-1.9 |
Decreased ERK phosphorylation after EGF stimulation |
10 minutes EGF stimulation |
yes |
|
RTK-Ras-ERK pathway regulation (1) |
Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling. |
Friedman et al. |
2011 |
22028469 |
Cell line |
S2R+ |
ERK phosphorylation |
Fluorescence |
np |
Genome-wide |
dsRNA |
Z-score |
> 1.5 OR < -1.5 |
|
GR00214-A-1 |
40155 |
FBgn0261283 |
HLH106 |
DRSC11182 |
2.73 |
Increased ERK phosphorylation after EGF stimulation |
0 minutes EGF stimulation |
yes |
|
RTK-Ras-ERK pathway regulation (1) |
Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling. |
Friedman et al. |
2011 |
22028469 |
Cell line |
S2R+ |
ERK phosphorylation |
Fluorescence |
np |
Genome-wide |
dsRNA |
Z-score |
> 1.5 OR < -1.5 |
|
GR00214-A-2 |
40155 |
FBgn0261283 |
HLH106 |
DRSC11182 |
-1.67 |
Decreased ERK phosphorylation after sSpitz and EGF stimulation |
30 minutes sSpitz stimulation |
no |
|
RTK-Ras-ERK pathway regulation (2) |
Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling. |
Friedman et al. |
2011 |
22028469 |
Cell line |
Kc167 |
ERK phosphorylation |
Fluorescence |
np |
Genome-wide |
dsRNA |
Z-score |
> 1.5 OR < -1.5 |
|
GR00214-A-2 |
40155 |
FBgn0261283 |
HLH106 |
DRSC11182 |
-2.13 |
Decreased ERK phosphorylation after sSpitz and EGF stimulation |
10 minutes sSpitz stimulation |
no |
|
RTK-Ras-ERK pathway regulation (2) |
Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling. |
Friedman et al. |
2011 |
22028469 |
Cell line |
Kc167 |
ERK phosphorylation |
Fluorescence |
np |
Genome-wide |
dsRNA |
Z-score |
> 1.5 OR < -1.5 |
|
GR00218-S |
40155 |
CG8522 |
HLH106 |
AMB21335 |
-0.15 |
none |
|
no |
|
Hippo pathway regulation |
Salt-inducible kinases regulate growth through the Hippo signalling pathway in Drosophila |
Wehr et al. |
2013 |
23263283 |
Cell line |
S2R+ |
Hippo pathway reporter |
Luminescence |
np |
Genome-wide |
dsRNA |
Z-score |
> 3 OR < -3 |
Author-submitted data. Primary screen |
GR00273-A-1 |
40155 |
FBgn0261283 |
HLH106 |
DRSC11182 |
2 |
Effect on Polycomb (Pc) foci |
|
|
|
Polycomb group (PcG) proteins regulation (1) |
Identification of Regulators of the Three-Dimensional Polycomb Organization by a Microscopy-Based Genome-wide RNAi Screen |
Gonzalez et al. |
2014 |
24703951 |
Cell line |
S2 |
Pc-GFP protein localization |
Fluorescence |
DRSC |
Genome-wide and transcription factors |
dsRNA |
Visual inspection |
1 |
Additional phenotypic clustering screen available. |
GR00273-A-1 |
40155 |
FBgn0261283 |
HLH106 |
DRSC11182 |
3 |
Effect on Polycomb (Pc) foci |
|
|
|
Polycomb group (PcG) proteins regulation (1) |
Identification of Regulators of the Three-Dimensional Polycomb Organization by a Microscopy-Based Genome-wide RNAi Screen |
Gonzalez et al. |
2014 |
24703951 |
Cell line |
S2 |
Pc-GFP protein localization |
Fluorescence |
DRSC |
Genome-wide and transcription factors |
dsRNA |
Visual inspection |
1 |
Additional phenotypic clustering screen available. |
GR00273-A-2 |
40155 |
FBgn0261283 |
HLH106 |
DRSC11182 |
np |
Loss of Polycomb (Pc) foci, diffuse nuclear staining |
|
|
|
Polycomb group (PcG) proteins regulation (2) |
Identification of Regulators of the Three-Dimensional Polycomb Organization by a Microscopy-Based Genome-wide RNAi Screen |
Gonzalez et al. |
2014 |
24703951 |
Cell line |
S2 |
Polycomb-GFP protein localization |
Fluorescence |
DRSC |
Selected genes |
dsRNA |
Visual inspection |
np |
|
GR00282-A |
40155 |
CG8522 |
HLH106 |
37641 |
np |
none |
|
|
|
piRNA pathway regulation |
The Genetic Makeup of the Drosophila piRNA Pathway |
Handler |
2013 |
23665231 |
Tissue |
tj-GAL4 |
Gypsy transposon expression |
Microscopy |
VDRC |
Selected genes |
UAS-IR construct |
Visual inspection |
np |
See comment for ovarian morphology data. Gene expression data shown in the comment derive from an ovarian stem cell line. VDRC library: KK and GD used, see phenotype data |
GR00282-A |
40155 |
CG8522 |
HLH106 |
37640 |
np |
none |
|
|
|
piRNA pathway regulation |
The Genetic Makeup of the Drosophila piRNA Pathway |
Handler |
2013 |
23665231 |
Tissue |
tj-GAL4 |
Gypsy transposon expression |
Microscopy |
VDRC |
Selected genes |
UAS-IR construct |
Visual inspection |
np |
See comment for ovarian morphology data. Gene expression data shown in the comment derive from an ovarian stem cell line. VDRC library: KK and GD used, see phenotype data |
GR00284-A |
40155 |
CG8522 |
HLH106 |
37640 |
0.23318980123026972 |
none |
|
|
|
piRNA pathway regulation |
A Transcriptome-wide RNAi Screen in the Drosophila Ovary Reveals Factors of the Germline piRNA Pathway |
Czech et al. |
2013 |
23665227 |
Tissue |
nos-GAL4 |
Transposon expression |
qPCR |
VDRC |
Selected genes |
UAS-IR construct |
Z-score |
Weak < -1.5; strong: < -2 |
KK and GD libraries used (see phenotype data) |
GR00308-A |
40155 |
CG8522 |
HLH106 |
np |
3 |
Decreased cell aggregation |
|
|
|
Cadherin-mediated cell-cell adhesion |
A genome-wide screen identifies conserved protein hubs required for cadherin-mediated cell–cell adhesion |
Toret et al. |
2014 |
24446484 |
Cell line |
S2 |
Cell aggregation |
Fluorescence |
V2 RNAi library (Thermo Fisher Scientific) |
Genome-wide |
dsRNA |
Visual inspection; average of 3 replicates; 0 |
> 1.5 |
Additional secondary screen available. S2 cells stably express DE-cadherin. |
GR00311-A |
40155 |
FBgn0261283 |
HLH106 |
DRSC11182 |
np |
Actin defect, other cellular phenotype |
|
|
cell shape variable, decreased level of actin, decreased cell number, loss of cell monolayer |
Actin and microtubule morphology |
Comparative RNAi screening identifies a conserved core metazoan actinome by phenotype |
Rohn et al. |
2011 |
21893601 |
Cell line |
S2R+ |
Alpha-tubulin and F-actin protein expression |
Fluorescence |
DRSC |
Genome-wide |
dsRNA |
Visual inspection |
np |
Exact phenotypes are shown in the comment section. Several genes were indicated as hits but no phenotype was provided. The screen data plus images is available at http://jcb-dataviewer.rupress.org/jcb/browse/4609/S2. |
GR00326-A |
40155 |
FBgn0261283 |
HLH106 |
37640 |
np |
none |
|
|
|
Synapse formation and maintenance |
A large-scale RNAi screen identifies functional classes of genes shaping synaptic development and maintenance |
Valakh et al. |
2012 |
22542760 |
Tissue |
Elav-Gal4 |
Neuromuscular junction morphology |
Fluorescence |
VDRC |
Selected genes |
UAS-IR construct |
Visual inspection |
np |
For further phenotype explanations sp. |
GR00335-A |
40155 |
FBgn0261283 |
HLH106 |
HMS00080 |
np |
none |
|
|
|
Germline stem cell (GSC) regulation |
A Regulatory Network of Drosophila Germline Stem Cell Self-Renewal |
Yan et al. |
2014 |
24576427 |
Tissue |
MTD-GAL4 or UAS-dcr2; nanos-GAL4 |
Spectrin and vasa protein expression |
Fluorescence |
TRiP |
Selected genes |
UAS-IR construct |
Visual inspection |
np |
More detailed phenotypes for some genes are shown in the comment. Various VALIUM vectors were used. |
GR00335-A |
40155 |
FBgn0261283 |
HLH106 |
JF01997 |
np |
none |
|
|
|
Germline stem cell (GSC) regulation |
A Regulatory Network of Drosophila Germline Stem Cell Self-Renewal |
Yan et al. |
2014 |
24576427 |
Tissue |
MTD-GAL4 or UAS-dcr2; nanos-GAL4 |
Spectrin and vasa protein expression |
Fluorescence |
TRiP |
Selected genes |
UAS-IR construct |
Visual inspection |
np |
More detailed phenotypes for some genes are shown in the comment. Various VALIUM vectors were used. |
|
40155 |
FBgn0261283 |
np |
np |
sp |
none |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
GR00367-S |
40155 |
CG8522 |
|
37640 |
np |
liquid clearance defect |
|
|
VDRC |
Drosophila airway maturation |
Transient junction anisotropies orient annular cell polarization in the Drosophila airway tubes |
Hosono et al. |
2015 |
26551273 |
Tissue |
btl-GAL4 |
Liquid clearance defect and viability |
Visual inspection |
VDRC, Trip, NIG |
Genome-wide |
UAS-IR construct |
Frequency |
>30% |
|
GR00379-A-1 |
40155 |
CG8522 |
|
37640 |
-0.5615898006329925 |
none |
|
|
No phenotype in egg laying/hatching or larvae in egg laying or larvae |
Stem cell maintenance |
Regulation of Ribosome Biogenesis and Protein Synthesis Controls Germline Stem Cell Differentiation |
Sanchez et al. |
2016 |
26669894 |
Organism |
nanos-GAL4 |
nos and yTub37c mRNA expression |
qPCR |
VDRC |
Selected genes |
UAS-IR construct |
Z-score |
Low: 1 - 2.5; Medium: 2.5 - 4; High: > |
Selected genes are: transcriptome-wide in female Drosophila. Additional phenotypes (egg laying/hatching) noted in the comment section. Subset libraries from VDRC (KK or GD) can be found in a column next to the comment field. |
GR00388-A |
40155 |
CG8522 |
|
BL34073 |
|
Lethal |
|
|
|
Regulation of intestinal stem cells (ISC) |
Genome-wide RNAi Screen Identifies Networks Involved in Intestinal Stem Cell Regulation in Drosophila |
Zeng et al. |
2015 |
25704823 |
Tissue |
act5C-GAL4 |
Viability |
Visual inspection |
VDRC and BDSC |
Genome-wide |
UAS-IR construct |
np |
np |
Lethal transgenic lines identified from the primary screen were crossed with temperature-sensitive esg-GAL4 flies. Phenotypes of ISCs from the dissected midguts are shown in the "Comment" section. |
GR00388-A |
40155 |
CG8522 |
|
BL25975 |
|
Lethal |
|
|
|
Regulation of intestinal stem cells (ISC) |
Genome-wide RNAi Screen Identifies Networks Involved in Intestinal Stem Cell Regulation in Drosophila |
Zeng et al. |
2015 |
25704823 |
Tissue |
act5C-GAL4 |
Viability |
Visual inspection |
VDRC and BDSC |
Genome-wide |
UAS-IR construct |
np |
np |
Lethal transgenic lines identified from the primary screen were crossed with temperature-sensitive esg-GAL4 flies. Phenotypes of ISCs from the dissected midguts are shown in the "Comment" section. |