| GR00002-A |
43437 |
FBgn0039635 |
CG11876 |
DRSC14420 |
1.816606833 |
none |
|
no |
|
Lipid storage |
COPI complex is a regulator of lipid homeostasis. |
Beller et al. |
2008 |
19067489 |
Cell line |
Kc167 |
Nuclear to lipid droplet cross-sectional area |
Fluorescence |
np |
Genome-wide |
dsRNA |
B-score |
> 2 OR < -1.7 |
Additional information about a secondary screen with non-overlaping dsRNAs |
GR00002-A |
43437 |
FBgn0039635 |
CG11876 |
DRSC14420 |
0 |
none |
|
no |
|
Lipid storage |
COPI complex is a regulator of lipid homeostasis. |
Beller et al. |
2008 |
19067489 |
Cell line |
Kc167 |
Nuclear to lipid droplet cross-sectional area |
Fluorescence |
np |
Genome-wide |
dsRNA |
B-score |
> 2 OR < -1.7 |
Additional information about a secondary screen with non-overlaping dsRNAs |
GR00031-A-1 |
43437 |
|
|
HFA14420 |
0.5 |
none |
|
yes |
|
Cell growth and viability (1) |
Genome-wide RNAi analysis of growth and viability in Drosophila cells. |
Boutros et al. |
2004 |
14764878 |
Cell line |
Kc167 |
Cell number and viability |
Luminescence |
Custom-made (HFA) |
Genome-wide |
dsRNA |
Z-score |
> |
|
GR00031-A-2 |
43437 |
|
|
HFA14420 |
0.6 |
none |
|
no |
|
Cell growth and viability (2) |
Genome-wide RNAi analysis of growth and viability in Drosophila cells. |
Boutros et al. |
2004 |
14764878 |
Cell line |
S2R+ |
Cell number and viability |
Luminescence |
Custom-made (HFA) |
Genome-wide |
dsRNA |
Z-score |
> |
|
|
43437 |
FBgn0039635 |
CG11876 |
GH08474 |
sp |
none |
|
no |
library: DGC1 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
GR00065-A |
43437 |
CG11876 |
CG11876 |
CG11876 |
np |
none |
|
no |
|
Dendrite pattern formation |
Genome-wide analyses identify transcription factors required for proper morphogenesis of Drosophila sensory neuron dendrites. |
Parrish et al. |
2006 |
16547170 |
Tissue |
GAL4221 |
mCD8 protein expression |
Fluorescence |
Custom-made |
Transcription factors |
UAS-IR construct |
np |
Phenotypes in multiple blind tests |
Additional information about secondary screens |
|
43437 |
FBgn0039635 |
CG11876 |
np |
1.166 |
Increased mitochondrial citrate synthase activity |
|
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
GR00159-A |
43437 |
|
CG11876 |
DRSC14420 |
np |
none |
|
no |
|
Muscle assembly and maintenance |
RNA interference screening in Drosophila primary cells for genes involved in muscle assembly and maintenance. |
Bai et al. |
2008 |
18359903 |
Primary cells |
primary embryonic cells |
Muscle cell morphology |
Fluorescence |
np |
Selected and random genes |
dsRNA |
Percentage of muscles with a given phenotype |
Severe: > 80 %; medium: ~ 50 % |
|
GR00189-A-1 |
43437 |
FBgn0039635 |
CG11876 |
BKN27865 |
np |
Upregulation of Notch pathway |
|
yes |
|
Notch pathway regulation (1) |
A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network. |
Saj et al. |
2010 |
20493818 |
Cell line |
S2 |
Notch pathway reporter |
Luminescence |
BKN |
Genome-wide |
dsRNA |
Complex, sp |
Complex criteria |
|
GR00189-A-2 |
43437 |
FBgn0039635 |
CG11876 |
11876R-2 |
sp |
Upregulation of Notch pathway; adult wing veins: deltas; wing disc size: overgrown; wing disc NRE:EGFP: up, ectopic; wing disc myrRFP: accumulation |
|
yes |
en-GAL4 |
Notch pathway regulation (2) |
A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network. |
Saj et al. |
2010 |
20493818 |
Tissue |
en-GAL4, C96-GAL4 and vg-GAL4 |
Notch pathway reporter, wing imaginal discs morphology, adult wing morphology and viability |
Fluorescence and visual inspection |
Notch pathway component enriched RNAi library |
Selected genes |
UAS-IR construct |
Phenotype strength |
np |
|
GR00189-A-2 |
43437 |
FBgn0039635 |
CG11876 |
11876R-3 |
sp |
Upregulation of Notch pathway; delay of larval development; wing disc size: overgrown; wing disc NRE:EGFP: up; wing disc myrRFP: accumulation, reduced; lethal |
|
yes |
en-GAL4 |
Notch pathway regulation (2) |
A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network. |
Saj et al. |
2010 |
20493818 |
Tissue |
en-GAL4, C96-GAL4 and vg-GAL4 |
Notch pathway reporter, wing imaginal discs morphology, adult wing morphology and viability |
Fluorescence and visual inspection |
Notch pathway component enriched RNAi library |
Selected genes |
UAS-IR construct |
Phenotype strength |
np |
|
GR00189-A-2 |
43437 |
FBgn0039635 |
CG11876 |
11876R-2 |
sp |
Upregulation of Notch pathway; wing disc NRE:EGFP: up, broader, ectopic; wing disc myrRFP: accumulation, reduced; lethal |
|
yes |
en-GAL4 |
Notch pathway regulation (2) |
A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network. |
Saj et al. |
2010 |
20493818 |
Tissue |
en-GAL4, C96-GAL4 and vg-GAL4 |
Notch pathway reporter, wing imaginal discs morphology, adult wing morphology and viability |
Fluorescence and visual inspection |
Notch pathway component enriched RNAi library |
Selected genes |
UAS-IR construct |
Phenotype strength |
np |
|
GR00189-A-2 |
43437 |
FBgn0039635 |
CG11876 |
11876R-2 |
sp |
Upregulation of Notch pathway; wing disc NRE:EGFP: up, ectopic; wing disc myrRFP: accumulation |
|
yes |
en-GAL4 |
Notch pathway regulation (2) |
A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network. |
Saj et al. |
2010 |
20493818 |
Tissue |
en-GAL4, C96-GAL4 and vg-GAL4 |
Notch pathway reporter, wing imaginal discs morphology, adult wing morphology and viability |
Fluorescence and visual inspection |
Notch pathway component enriched RNAi library |
Selected genes |
UAS-IR construct |
Phenotype strength |
np |
|
GR00189-A-2 |
43437 |
FBgn0039635 |
CG11876 |
11876R-3 |
sp |
Upregulation of Notch pathway; wing disc size: overgrown; wing disc NRE:EGFP: up, ectopic; wing disc myrRFP: accumulation; lethal |
|
yes |
en-GAL4 |
Notch pathway regulation (2) |
A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network. |
Saj et al. |
2010 |
20493818 |
Tissue |
en-GAL4, C96-GAL4 and vg-GAL4 |
Notch pathway reporter, wing imaginal discs morphology, adult wing morphology and viability |
Fluorescence and visual inspection |
Notch pathway component enriched RNAi library |
Selected genes |
UAS-IR construct |
Phenotype strength |
np |
|
GR00189-A-2 |
43437 |
FBgn0039635 |
CG11876 |
11876R-2 |
sp |
Upregulation of Notch pathway; wing disc size: overgrown; wing disc NRE:EGFP: up; wing disc myrRFP: accumulation, reduced; lethal |
|
yes |
en-GAL4 |
Notch pathway regulation (2) |
A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network. |
Saj et al. |
2010 |
20493818 |
Tissue |
en-GAL4, C96-GAL4 and vg-GAL4 |
Notch pathway reporter, wing imaginal discs morphology, adult wing morphology and viability |
Fluorescence and visual inspection |
Notch pathway component enriched RNAi library |
Selected genes |
UAS-IR construct |
Phenotype strength |
np |
|
GR00189-A-3 |
43437 |
FBgn0039635 |
CG11876 |
np |
np |
Upregulation of Notch pathway |
|
yes |
|
Notch pathway regulation (3) |
A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network. |
Saj et al. |
2010 |
20493818 |
Tissue |
GMR-GAL4 |
Notch pathway reporter |
Fluorescence |
Notch pathway component enriched RNAi library |
Selected genes |
UAS-IR construct |
Average fluorescent intensity |
Complex criteria |
|
GR00218-S |
43437 |
CG11876 |
|
AMB26609 |
1.07 |
none |
|
no |
|
Hippo pathway regulation |
Salt-inducible kinases regulate growth through the Hippo signalling pathway in Drosophila |
Wehr et al. |
2013 |
23263283 |
Cell line |
S2R+ |
Hippo pathway reporter |
Luminescence |
np |
Genome-wide |
dsRNA |
Z-score |
> 3 OR < -3 |
Author-submitted data. Primary screen |
GR00239-A-1 |
43437 |
CG11876 |
|
11876R |
sp |
none |
|
no |
|
Glycosylation regulation (1) |
Identification of genes required for neural-specific glycosylation using functional genomics. |
Yamamoto-Hino et al. |
2010 |
21203496 |
Tissue |
GMR-GAL4 |
Chaoptin (Chp) protein expression, alpha1,3-fucose, alpha1,6-fucose, (GlcNAc)n, GlcNAcb1-4GlcNAc and mannose Chp glycosylation and viability |
Luminescence |
np |
Selected genes |
UAS-IR construct |
Z-score |
> 3 |
|
GR00282-A |
43437 |
CG11876 |
CG11876 |
104022 |
np |
none |
|
|
|
piRNA pathway regulation |
The Genetic Makeup of the Drosophila piRNA Pathway |
Handler |
2013 |
23665231 |
Tissue |
tj-GAL4 |
Gypsy transposon expression |
Microscopy |
VDRC |
Selected genes |
UAS-IR construct |
Visual inspection |
np |
See comment for ovarian morphology data. Gene expression data shown in the comment derive from an ovarian stem cell line. VDRC library: KK and GD used, see phenotype data |
GR00284-A |
43437 |
CG11876 |
CG11876 |
104022 |
-0.6788405166730245 |
none |
|
|
|
piRNA pathway regulation |
A Transcriptome-wide RNAi Screen in the Drosophila Ovary Reveals Factors of the Germline piRNA Pathway |
Czech et al. |
2013 |
23665227 |
Tissue |
nos-GAL4 |
Transposon expression |
qPCR |
VDRC |
Selected genes |
UAS-IR construct |
Z-score |
Weak < -1.5; strong: < -2 |
KK and GD libraries used (see phenotype data) |
GR00311-A |
43437 |
FBgn0039635 |
CG11876 |
DRSC14420 |
np |
none |
|
|
|
Actin and microtubule morphology |
Comparative RNAi screening identifies a conserved core metazoan actinome by phenotype |
Rohn et al. |
2011 |
21893601 |
Cell line |
S2R+ |
Alpha-tubulin and F-actin protein expression |
Fluorescence |
DRSC |
Genome-wide |
dsRNA |
Visual inspection |
np |
Exact phenotypes are shown in the comment section. Several genes were indicated as hits but no phenotype was provided. The screen data plus images is available at http://jcb-dataviewer.rupress.org/jcb/browse/4609/S2. |
GR00315-A-1 |
43437 |
CG11876 |
CG11876 |
104022 |
np |
Effect on follicular epithelium morphology |
|
|
further phenotype data in classification screen |
Follicular epithelium development (1) |
A genome-scale in vivo RNAi analysis of epithelial development in Drosophila identifies new proliferation domains outside of the stem cell niche |
Berns et al. |
2014 |
24762813 |
Tissue |
Escargot-GAL4 and GR1-GAL4, GR1-GAL4, traffic jam-GAL4 |
Follicular epithelium morphology |
Fluorescence |
VDRC KK |
Random genes |
UAS-IR construct |
Visual inspection |
np |
Further classification screen available, see follicular epithelium development (2). |
GR00315-A-2 |
43437 |
CG11876 |
CG11876 |
104022 |
np |
Defect in formation and maturation phase |
|
|
|
Follicular epithelium development (2) |
A genome-scale in vivo RNAi analysis of epithelial development in Drosophila identifies new proliferation domains outside of the stem cell niche |
Berns et al. |
2014 |
24762813 |
Tissue |
traffic jam-GAL4 |
Follicular epithelium morphology |
Fluorescence |
VDRC KK |
Selected genes |
UAS-IR construct |
Visual inspection |
np |
For more detailed phenotypes sp. Cell morphology was analized by aPKC and DLG protein expression. Additional validation screens available. |
GR00326-A |
43437 |
FBgn0039635 |
CG11876 |
11876 |
np |
none |
|
|
|
Synapse formation and maintenance |
A large-scale RNAi screen identifies functional classes of genes shaping synaptic development and maintenance |
Valakh et al. |
2012 |
22542760 |
Tissue |
Elav-Gal4 |
Neuromuscular junction morphology |
Fluorescence |
VDRC |
Selected genes |
UAS-IR construct |
Visual inspection |
np |
For further phenotype explanations sp. |
|
43437 |
FBgn0039635 |
np |
np |
sp |
none |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
GR00367-S |
43437 |
CG11876 |
|
104022 |
np |
lethal or adult morphology phenotype |
|
|
VDRC |
Drosophila airway maturation |
Transient junction anisotropies orient annular cell polarization in the Drosophila airway tubes |
Hosono et al. |
2015 |
26551273 |
Tissue |
btl-GAL4 |
Liquid clearance defect and viability |
Visual inspection |
VDRC, Trip, NIG |
Genome-wide |
UAS-IR construct |
Frequency |
>30% |
|
GR00379-A-1 |
43437 |
CG11876 |
|
104022 |
-0.3579024860587624 |
none |
|
|
No phenotype in egg laying/hatching or larvae in egg laying or larvae |
Stem cell maintenance |
Regulation of Ribosome Biogenesis and Protein Synthesis Controls Germline Stem Cell Differentiation |
Sanchez et al. |
2016 |
26669894 |
Organism |
nanos-GAL4 |
nos and yTub37c mRNA expression |
qPCR |
VDRC |
Selected genes |
UAS-IR construct |
Z-score |
Low: 1 - 2.5; Medium: 2.5 - 4; High: > |
Selected genes are: transcriptome-wide in female Drosophila. Additional phenotypes (egg laying/hatching) noted in the comment section. Subset libraries from VDRC (KK or GD) can be found in a column next to the comment field. |
GR00385-A |
43437 |
|
|
104022 |
0.10106246799795186 |
Low performer in olfactory memory formation |
|
|
Final hit |
Regulation of olfactory memory formation |
Identification of genes that promote or inhibit olfactory memory formation in Drosophila. |
Walkinshaw et al. |
2015 |
25644700 |
Organism |
Nsyb-GAL4 |
T-maze performance |
Visual inspection |
VDRC |
Selected genes |
UAS-IR construct |
Performance index, sp |
High performer in olfactory memory formation: > |
Genes were preselected for relevance to CNS development and function using bioinformatic criteria. Additionally, defects in wing formation are considered in the comments column. We could not confirm the exact number of primary hits; however, final hits are noted in the comments field. |
GR00388-A |
43437 |
CG11876 |
|
KK104022 |
|
Lethal |
|
|
|
Regulation of intestinal stem cells (ISC) |
Genome-wide RNAi Screen Identifies Networks Involved in Intestinal Stem Cell Regulation in Drosophila |
Zeng et al. |
2015 |
25704823 |
Tissue |
act5C-GAL4 |
Viability |
Visual inspection |
VDRC and BDSC |
Genome-wide |
UAS-IR construct |
np |
np |
Lethal transgenic lines identified from the primary screen were crossed with temperature-sensitive esg-GAL4 flies. Phenotypes of ISCs from the dissected midguts are shown in the "Comment" section. |