| GR00002-A |
43673 |
FBgn0002413 |
dco |
DRSC16929 |
1.045432191 |
none |
|
no |
|
Lipid storage |
COPI complex is a regulator of lipid homeostasis. |
Beller et al. |
2008 |
19067489 |
Cell line |
Kc167 |
Nuclear to lipid droplet cross-sectional area |
Fluorescence |
np |
Genome-wide |
dsRNA |
B-score |
> 2 OR < -1.7 |
Additional information about a secondary screen with non-overlaping dsRNAs |
GR00002-A |
43673 |
FBgn0002413 |
dco |
DRSC16929 |
0 |
none |
|
no |
|
Lipid storage |
COPI complex is a regulator of lipid homeostasis. |
Beller et al. |
2008 |
19067489 |
Cell line |
Kc167 |
Nuclear to lipid droplet cross-sectional area |
Fluorescence |
np |
Genome-wide |
dsRNA |
B-score |
> 2 OR < -1.7 |
Additional information about a secondary screen with non-overlaping dsRNAs |
GR00014-A |
43673 |
|
dco |
DRSC16929 |
weak |
Decreased Flag-Mad nuclear accumulation |
|
no |
|
Dpp pathway regulation |
Msk is required for nuclear import of TGF-{beta}/BMP-activated Smads. |
Xu et al. |
2007 |
17785517 |
Cell line |
S2R+ |
Flag-Mad protein expression and subcellular location |
Fluorescence |
rp |
Genome-wide |
dsRNA |
Visual inspection |
np |
|
GR00021-A-0 |
43673 |
FBgn0002413 |
|
DRSC16929 |
strong |
ERK activation increased |
|
no |
|
ERK signaling |
A functional RNAi screen for regulators of receptor tyrosine kinase and ERK signalling. |
Friedman et al. |
2006 |
17086199 |
Cell line |
S2R+ |
ERK signaling |
Fluorescence |
DRSC |
|
dsRNA |
Weak, moderate, strong |
np |
|
GR00026-A-0 |
43673 |
FBgn0002413 |
discs overgrown |
np |
np |
Morphology |
|
no |
|
Cell morphology |
A functional genomic analysis of cell morphology using RNA interference. |
Kiger et al. |
2003 |
14527345 |
Cell line |
Kc167, S2R+ |
Morphology |
High content (microscopy) |
Custom-made |
|
dsRNA |
Visual inspection |
np |
|
GR00030-A-1 |
43673 |
CG2048 |
dco |
dco |
np |
none |
|
yes |
|
Cell cycle regulation (1) |
Genome-wide survey of protein kinases required for cell cycle progression. |
Bettencourt-Dias et al. |
2004 |
15616552 |
Cell line |
S2 |
alpha-tubulin and gamma-tubulin protein expression, histone H3 phosphorylation and DNA content |
Flow cytometry |
rp |
Kinases |
dsRNA |
Confidence intervals |
Complex criteria |
|
GR00030-A-2 |
43673 |
CG2048 |
dco |
dco |
np |
none |
|
no |
|
Cell cycle regulation (2) |
Genome-wide survey of protein kinases required for cell cycle progression. |
Bettencourt-Dias et al. |
2004 |
15616552 |
Cell line |
S2 |
Histone H3 phosphorylation, Cyclin A and Cyclin B protein expression |
Flow cytometry |
rp |
Kinases and kinase regulators |
dsRNA |
np |
np |
|
GR00031-A-1 |
43673 |
|
|
HFA16929 |
0.6 |
none |
|
yes |
|
Cell growth and viability (1) |
Genome-wide RNAi analysis of growth and viability in Drosophila cells. |
Boutros et al. |
2004 |
14764878 |
Cell line |
Kc167 |
Cell number and viability |
Luminescence |
Custom-made (HFA) |
Genome-wide |
dsRNA |
Z-score |
> |
|
GR00031-A-2 |
43673 |
|
|
HFA16929 |
0.3 |
none |
|
no |
|
Cell growth and viability (2) |
Genome-wide RNAi analysis of growth and viability in Drosophila cells. |
Boutros et al. |
2004 |
14764878 |
Cell line |
S2R+ |
Cell number and viability |
Luminescence |
Custom-made (HFA) |
Genome-wide |
dsRNA |
Z-score |
> |
|
GR00038-A-0 |
43673 |
FBgn0002413 |
dco |
np |
* |
Escape pff LLO- strain |
|
no |
|
L. monocytogenes infection |
Use of RNA interference in Drosophila S2 cells to identify host pathways controlling compartmentalization of an intracellular pathogen. |
Cheng et al. |
2005 |
16157870 |
Cell line |
S2 |
L. monocytogenes infection |
High content (microscopy) |
Custom-made |
|
dsRNA |
Visual inspection |
np |
|
|
43673 |
FBgn0002413 |
dco |
np |
sp |
none |
|
no |
library: DGC1 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
43673 |
FBgn0002413 |
dco |
LD04938 |
sp |
none |
|
no |
library: DGC1 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
43673 |
FBgn0002413 |
dco |
LD27173 |
sp |
none |
|
no |
library: DGC1 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
43673 |
FBgn0051149, FBgn0002413 |
CG31149, dco |
HL01663 |
sp |
none |
|
no |
library: DGC1 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
43673 |
FBgn0002413 |
dco |
CT42623 |
sp |
none |
|
no |
library: PHOSPHO |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
43673 |
FBgn0002413 |
dco |
CT6302 |
sp |
none |
|
no |
library: PHOSPHO |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
GR00065-A |
43673 |
CG2048 |
dco |
dco |
np |
none |
|
no |
|
Dendrite pattern formation |
Genome-wide analyses identify transcription factors required for proper morphogenesis of Drosophila sensory neuron dendrites. |
Parrish et al. |
2006 |
16547170 |
Tissue |
GAL4221 |
mCD8 protein expression |
Fluorescence |
Custom-made |
Transcription factors |
UAS-IR construct |
np |
Phenotypes in multiple blind tests |
Additional information about secondary screens |
GR00084-A-0 |
43673 |
FBgn0002413 |
CG2048 |
np |
np |
C. trachomatis infection down |
|
no |
|
C. trachomatis infection |
RNA interference screen identifies Abl kinase and PDGFR signaling in Chlamydia trachomatis entry. |
Elwell et al. |
2008 |
18369471 |
Cell line |
S2 |
C. trachomatis infection |
High content (microscopy) |
OpenBiosystems |
|
dsRNA |
Visual inspection |
np |
|
GR00092-A |
43673 |
FBgn0002413 |
CG2048 |
RDM1190-7296758 |
np |
none |
|
no |
|
Microtubule assembly and organization |
Regulation of microtubule assembly and organization in mitosis by the AAA+ ATPase Pontin. |
Ducat et al. |
2008 |
18463163 |
Cell line |
S2 |
DNA content, alpha-tubulin and CP309 protein expression |
Fluorescence |
OpenBiosystems Drosophila RNAi Library 1.0 |
Mitotic regulator genes |
dsRNA |
Complex, sp |
Complex criteria |
|
GR00128-A-2 |
43673 |
FBgn0002413 |
CG2048 |
DRSC31017 |
sp |
none |
|
no |
|
Combinatorial effect with methyl methanesulphonate (2) |
A network of conserved damage survival pathways revealed by a genomic RNAi screen. |
Ravi et al. |
2009 |
19543366 |
Cell line |
Kc167 |
Viability (synthetic lethal) |
Luminescence |
Version 1 |
Selected genes |
dsRNA |
rp |
rp |
|
GR00131-A-1 |
43673 |
|
dco |
DRSC16929 |
25 - 50 |
Altered mitochondrial Ca2+ and/or H+ levels |
|
no |
|
Mitochondrial Ca2+/H+ antiporter regulation (1) |
Genome-wide RNAi screen identifies Letm1 as a mitochondrial Ca2+/H+ antiporter. |
Jiang et al. |
2009 |
19797662 |
Cell line |
S2 |
mt-pericam protein expression (reporter of mitochondrial Ca2+ and H+ levels) |
Fluorescence |
np |
Genome-wide |
dsRNA |
Percentage inhibition |
Class I: > 75; class II: 50-75; class III: 25–50 |
|
GR00134-A-1 |
43673 |
CG2048 |
dco |
9241 |
np |
none |
|
no |
|
Muscle morphogenesis and function (1) |
Systematic genetic analysis of muscle morphogenesis and function in Drosophila. |
Schnorrer et al. |
2010 |
20220848 |
Tissue |
Mef2-GAL4 |
Posture, locomotion, flight and viability |
Visual inspection |
np |
Genome-wide |
UAS-IR construct |
rp |
S19 > 0.5 |
|
GR00135-A-1 |
43673 |
CG2048 |
dco |
9241 |
0.46 |
none |
|
yes |
|
Heat nociception (1) |
A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionarily conserved pain gene. |
Neely et al. |
2010 |
21074052 |
Organism |
elav-GAL4 |
Noxious heat avoidance and viability |
Fly count |
np |
Genome-wide |
UAS-IR construct |
Z-score |
> 1.65 |
Additional information about secondary screens (geotactic, phototaxis, and temperature sensitivity) |
GR00138-A-1 |
43673 |
CG2048 |
|
9241 |
1 |
none |
|
no |
|
Heart development and function (1) |
A global in vivo Drosophila RNAi screen identifies NOT3 as a conserved regulator of heart function. |
Neely et al. |
2010 |
20371351 |
Tissue |
TinCΔ4 12a-Gal4 |
Viability |
Fly count |
np |
Selected genes |
UAS-IR construct |
Developmental lethality |
< |
|
GR00142-A-1 |
43673 |
CG2048 |
dco |
9241 |
0.838235294117647 |
none |
|
no |
|
Serratia marcescens infection (1) |
Genome-wide RNAi screen identifies genes involved in intestinal pathogenic bacterial infection. |
Cronin et al. |
2009 |
19520911 |
Organism |
HSP70-GAL4; TubGAL80ts |
Heat shock and viability |
Fly count |
np |
Random genes |
UAS-IR construct |
Days life time (LT50) |
< -1.5 SD OR > 2 SD |
|
GR00144-A-4 |
43673 |
CG2048 |
|
9241 |
sp |
Bristle morphology defects, notum malformation death |
|
no |
partially lethal |
Notch pathway regulation (4) |
Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi. |
Mummery-Widmer et al. |
2009 |
19363474 |
Tissue |
pnr-GAL4 |
External sensory organ morphology and viability |
Visual inspection |
np |
Genome-wide |
UAS-IR construct |
Phenotype strength |
np |
|
GR00148-A |
43673 |
FBgn0002413 |
dco |
np |
2.27 |
Increased P-JNK protein expression with PGN |
60 min PGN induction |
no |
|
PGN-induced dJNK phosphorylation |
A quantitative RNAi screen for JNK modifiers identifies Pvr as a novel regulator of Drosophila immune signaling. |
Bond and Foley |
2009 |
19893628 |
Cell line |
S2 |
P-JNK protein expression |
Fluorescence |
Custom-made |
Genome-wide |
dsRNA |
Z-score |
Complex criteria |
Only hits stored in GenomeRNAi |
GR00159-A |
43673 |
|
dco |
DRSC16929 |
np |
none |
|
no |
|
Muscle assembly and maintenance |
RNA interference screening in Drosophila primary cells for genes involved in muscle assembly and maintenance. |
Bai et al. |
2008 |
18359903 |
Primary cells |
primary embryonic cells |
Muscle cell morphology |
Fluorescence |
np |
Selected and random genes |
dsRNA |
Percentage of muscles with a given phenotype |
Severe: > 80 %; medium: ~ 50 % |
|
GR00190-A-1 |
43673 |
FBgn0002413 |
dco |
9241 |
-0.356 |
none |
|
no |
|
Adiposity regulation (1) |
Drosophila genome-wide obesity screen reveals hedgehog as a determinant of brown versus white adipose cell fate. |
Pospisilik et al. |
2010 |
20074523 |
Organism |
Hsp70-GAL4;Tub-GAL80ts |
Total fly triglyceride expression |
Colorimetrics |
np |
Genome-wide |
UAS-IR construct |
Triglyceride change |
Z-score > 1.65 after 3 screening rounds |
Additional information about the primary screen |
GR00191-A-1 |
43673 |
CG2048 |
dco |
np |
np |
Increased melanotic mass formation |
|
yes |
|
Blood cell homeostasis regulation (1) |
An in vivo RNA interference screen identifies gene networks controlling Drosophila melanogaster blood cell homeostasis. |
Avet-Rochex et al. |
2010 |
20540764 |
Tissue |
srp-GAL4 |
Melanotic mass formation |
Microscopy |
np |
Selected genes |
UAS-IR construct |
np |
np |
|
GR00191-A-2 |
43673 |
CG2048 |
dco |
np |
np |
none |
|
yes |
|
Blood cell homeostasis regulation (2) |
An in vivo RNA interference screen identifies gene networks controlling Drosophila melanogaster blood cell homeostasis. |
Avet-Rochex et al. |
2010 |
20540764 |
Tissue |
hml∆-GAL4 |
Melanotic mass formation |
Microscopy |
np |
Selected genes |
UAS-IR construct |
np |
np |
|
GR00191-A-3 |
43673 |
CG2048 |
dco |
np |
8.9 |
Increased melanotic mass formation |
|
yes |
|
Blood cell homeostasis regulation (3) |
An in vivo RNA interference screen identifies gene networks controlling Drosophila melanogaster blood cell homeostasis. |
Avet-Rochex et al. |
2010 |
20540764 |
Tissue |
srp-GAL4 |
Melanotic mass formation |
Microscopy |
np |
Selected genes |
UAS-IR construct |
Tumor index |
> |
|
GR00191-A-4 |
43673 |
CG2048 |
dco |
np |
0 |
none |
|
yes |
|
Blood cell homeostasis regulation (4) |
An in vivo RNA interference screen identifies gene networks controlling Drosophila melanogaster blood cell homeostasis. |
Avet-Rochex et al. |
2010 |
20540764 |
Tissue |
hml∆-GAL4 |
Melanotic mass formation |
Microscopy |
np |
Selected genes |
UAS-IR construct |
Tumor index |
> |
|
GR00191-A-5 |
43673 |
CG2048 |
dco |
np |
51.4 |
Increased melanotic mass formation |
|
yes |
|
Blood cell homeostasis regulation (5) |
An in vivo RNA interference screen identifies gene networks controlling Drosophila melanogaster blood cell homeostasis. |
Avet-Rochex et al. |
2010 |
20540764 |
Tissue |
cg-GAL4 |
Melanotic mass formation |
Microscopy |
np |
Selected genes |
UAS-IR construct |
Tumor index |
> |
|
GR00191-A-6 |
43673 |
CG2048 |
dco |
np |
0 |
none |
|
yes |
non-overlapping dsRNA |
Blood cell homeostasis regulation (6) |
An in vivo RNA interference screen identifies gene networks controlling Drosophila melanogaster blood cell homeostasis. |
Avet-Rochex et al. |
2010 |
20540764 |
Tissue |
srp-GAL4 |
Melanotic mass formation |
Microscopy |
np |
Selected genes |
UAS-IR construct |
Tumor index |
> |
|
GR00191-A-7 |
43673 |
CG2048 |
dco |
np |
0 |
none |
|
yes |
non-overlapping dsRNA |
Blood cell homeostasis regulation (7) |
An in vivo RNA interference screen identifies gene networks controlling Drosophila melanogaster blood cell homeostasis. |
Avet-Rochex et al. |
2010 |
20540764 |
Tissue |
hml∆-GAL4 |
Melanotic mass formation |
Microscopy |
np |
Selected genes |
UAS-IR construct |
Tumor index |
> |
|
GR00191-A-8 |
43673 |
CG2048 |
dco |
np |
0 |
none |
|
no |
non-overlapping dsRNA |
Blood cell homeostasis regulation (8) |
An in vivo RNA interference screen identifies gene networks controlling Drosophila melanogaster blood cell homeostasis. |
Avet-Rochex et al. |
2010 |
20540764 |
Tissue |
cg-GAL4 |
Melanotic mass formation |
Microscopy |
np |
Selected genes |
UAS-IR construct |
Tumor index |
> |
|
GR00194-A |
43673 |
CG2048 |
dco |
np |
np |
none |
|
yes |
FFT: top 40, No. of corners: top 40, decision tree - Arp/Scar: top 40 |
S2 cell spreading |
A whole genome RNAi screen of Drosophila S2 cell spreading performed using automated computational image analysis. |
D'Ambrosio and Vale |
2010 |
21041442 |
Cell line |
S2U |
alpha-tubulin and actin protein expression |
Fluorescence |
V2 RNAi library |
Genome-wide |
dsRNA |
Complex, sp |
Complex criteria |
|
GR00201-A-1 |
43673 |
FBgn0002413 |
dco |
CG2048 (UCSF), dco (1) (Baum_Lab), dco (2) (Baum_Lab) |
np |
none |
|
yes |
|
Actin organization and cell morphology (1) |
Parallel RNAi screens across different cell lines identify generic and cell type-specific regulators of actin organization and cell morphology. |
Liu et al. |
2009 |
19265526 |
Cell line |
S2 |
alpha-Tubulin and F-actin protein expression |
Fluorescence |
Custom-made |
Kinases |
dsRNA |
Visual inspection |
np |
|
GR00201-A-2 |
43673 |
FBgn0002413 |
dco |
CG2048 (UCSF), dco (1) (Baum_Lab), dco (2) (Baum_Lab) |
np |
none |
|
yes |
|
Actin organization and cell morphology (2) |
Parallel RNAi screens across different cell lines identify generic and cell type-specific regulators of actin organization and cell morphology. |
Liu et al. |
2009 |
19265526 |
Cell line |
S2R+ |
alpha-Tubulin and F-actin protein expression |
Fluorescence |
Custom-made |
Kinases |
dsRNA |
Visual inspection |
np |
|
GR00201-A-3 |
43673 |
FBgn0002413 |
dco |
CG2048 (UCSF), dco (1) (Baum_Lab), dco (2) (Baum_Lab) |
np |
none |
|
yes |
|
Actin organization and cell morphology (3) |
Parallel RNAi screens across different cell lines identify generic and cell type-specific regulators of actin organization and cell morphology. |
Liu et al. |
2009 |
19265526 |
Cell line |
Kc167 |
alpha-Tubulin and F-actin protein expression |
Fluorescence |
Custom-made |
Kinases |
dsRNA |
Visual inspection |
np |
|
GR00201-A-4 |
43673 |
FBgn0002413 |
dco |
CG2048 (UCSF), dco (1) (Baum_Lab), dco (2) (Baum_Lab) |
np |
Altered cell morphology |
|
yes |
|
Actin organization and cell morphology (4) |
Parallel RNAi screens across different cell lines identify generic and cell type-specific regulators of actin organization and cell morphology. |
Liu et al. |
2009 |
19265526 |
Cell line |
BG2-c2 |
alpha-Tubulin and F-actin protein expression |
Fluorescence |
Custom-made |
Kinases |
dsRNA |
Visual inspection |
np |
|
GR00201-A-5 |
43673 |
FBgn0002413 |
dco |
CG2048 (UCSF), dco (1) (Baum_Lab), dco (2) (Baum_Lab) |
np |
Altered cell morphology |
|
yes |
|
Actin organization and cell morphology (5) |
Parallel RNAi screens across different cell lines identify generic and cell type-specific regulators of actin organization and cell morphology. |
Liu et al. |
2009 |
19265526 |
Cell line |
BG3-c1 |
alpha-Tubulin and F-actin protein expression |
Fluorescence |
Custom-made |
Kinases |
dsRNA |
Visual inspection |
np |
|
GR00201-A-6 |
43673 |
FBgn0002413 |
dco |
CG2048 (UCSF), dco (1) (Baum_Lab), dco (2) (Baum_Lab) |
np |
Altered cell morphology |
|
no |
|
Actin organization and cell morphology (6) |
Parallel RNAi screens across different cell lines identify generic and cell type-specific regulators of actin organization and cell morphology. |
Liu et al. |
2009 |
19265526 |
Cell line |
BG3-c2 |
alpha-Tubulin and F-actin protein expression |
Fluorescence |
Custom-made |
Kinases |
dsRNA |
Visual inspection |
np |
|
GR00202-A |
43673 |
FBgn0002413 |
dco |
np |
sp |
none |
|
no |
|
Vaccinia virus infection |
A kinome RNAi screen identified AMPK as promoting poxvirus entry through the control of actin dynamics. |
Moser et al. |
2010 |
20585561 |
Cell line |
DL1 |
Virally encoded beta-galactosidase protein expression |
Fluorescence |
Custom-made |
Kinases, phosphatases and selected genes |
dsRNA |
Z-score |
< -2 in both duplicates |
Author-reviewed data |
GR00214-A-1 |
43673 |
FBgn0002413 |
dco |
DRSC16929 |
0.58 |
none |
10 minutes EGF stimulation |
yes |
|
RTK-Ras-ERK pathway regulation (1) |
Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling. |
Friedman et al. |
2011 |
22028469 |
Cell line |
S2R+ |
ERK phosphorylation |
Fluorescence |
np |
Genome-wide |
dsRNA |
Z-score |
> 1.5 OR < -1.5 |
|
GR00214-A-1 |
43673 |
FBgn0002413 |
dco |
DRSC16929 |
0.86 |
none |
0 minutes EGF stimulation |
yes |
|
RTK-Ras-ERK pathway regulation (1) |
Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling. |
Friedman et al. |
2011 |
22028469 |
Cell line |
S2R+ |
ERK phosphorylation |
Fluorescence |
np |
Genome-wide |
dsRNA |
Z-score |
> 1.5 OR < -1.5 |
|
GR00214-A-2 |
43673 |
FBgn0002413 |
dco |
DRSC16929 |
0.22 |
none |
30 minutes sSpitz stimulation |
no |
|
RTK-Ras-ERK pathway regulation (2) |
Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling. |
Friedman et al. |
2011 |
22028469 |
Cell line |
Kc167 |
ERK phosphorylation |
Fluorescence |
np |
Genome-wide |
dsRNA |
Z-score |
> 1.5 OR < -1.5 |
|
GR00214-A-2 |
43673 |
FBgn0002413 |
dco |
DRSC16929 |
-0.19 |
none |
10 minutes sSpitz stimulation |
no |
|
RTK-Ras-ERK pathway regulation (2) |
Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling. |
Friedman et al. |
2011 |
22028469 |
Cell line |
Kc167 |
ERK phosphorylation |
Fluorescence |
np |
Genome-wide |
dsRNA |
Z-score |
> 1.5 OR < -1.5 |
|
GR00218-S |
43673 |
CG2048 |
dco |
AMB20823 |
2.49 |
none |
|
no |
|
Hippo pathway regulation |
Salt-inducible kinases regulate growth through the Hippo signalling pathway in Drosophila |
Wehr et al. |
2013 |
23263283 |
Cell line |
S2R+ |
Hippo pathway reporter |
Luminescence |
np |
Genome-wide |
dsRNA |
Z-score |
> 3 OR < -3 |
Author-submitted data. Primary screen |
GR00239-A-1 |
43673 |
CG2048 |
|
2048R |
sp |
none |
|
no |
|
Glycosylation regulation (1) |
Identification of genes required for neural-specific glycosylation using functional genomics. |
Yamamoto-Hino et al. |
2010 |
21203496 |
Tissue |
GMR-GAL4 |
Chaoptin (Chp) protein expression, alpha1,3-fucose, alpha1,6-fucose, (GlcNAc)n, GlcNAcb1-4GlcNAc and mannose Chp glycosylation and viability |
Luminescence |
np |
Selected genes |
UAS-IR construct |
Z-score |
> 3 |
|
GR00282-A |
43673 |
CG2048 |
dco |
9241 |
np |
none |
|
|
|
piRNA pathway regulation |
The Genetic Makeup of the Drosophila piRNA Pathway |
Handler |
2013 |
23665231 |
Tissue |
tj-GAL4 |
Gypsy transposon expression |
Microscopy |
VDRC |
Selected genes |
UAS-IR construct |
Visual inspection |
np |
See comment for ovarian morphology data. Gene expression data shown in the comment derive from an ovarian stem cell line. VDRC library: KK and GD used, see phenotype data |
GR00284-A |
43673 |
CG2048 |
dco |
9241 |
0.2059340441394972 |
none |
|
|
|
piRNA pathway regulation |
A Transcriptome-wide RNAi Screen in the Drosophila Ovary Reveals Factors of the Germline piRNA Pathway |
Czech et al. |
2013 |
23665227 |
Tissue |
nos-GAL4 |
Transposon expression |
qPCR |
VDRC |
Selected genes |
UAS-IR construct |
Z-score |
Weak < -1.5; strong: < -2 |
KK and GD libraries used (see phenotype data) |
GR00311-A |
43673 |
FBgn0002413 |
dco |
DRSC16929 |
np |
none |
|
|
|
Actin and microtubule morphology |
Comparative RNAi screening identifies a conserved core metazoan actinome by phenotype |
Rohn et al. |
2011 |
21893601 |
Cell line |
S2R+ |
Alpha-tubulin and F-actin protein expression |
Fluorescence |
DRSC |
Genome-wide |
dsRNA |
Visual inspection |
np |
Exact phenotypes are shown in the comment section. Several genes were indicated as hits but no phenotype was provided. The screen data plus images is available at http://jcb-dataviewer.rupress.org/jcb/browse/4609/S2. |
GR00335-A |
43673 |
FBgn0002413 |
dco |
GL00001 |
np |
Agametic |
|
|
|
Germline stem cell (GSC) regulation |
A Regulatory Network of Drosophila Germline Stem Cell Self-Renewal |
Yan et al. |
2014 |
24576427 |
Tissue |
MTD-GAL4 or UAS-dcr2; nanos-GAL4 |
Spectrin and vasa protein expression |
Fluorescence |
TRiP |
Selected genes |
UAS-IR construct |
Visual inspection |
np |
More detailed phenotypes for some genes are shown in the comment. Various VALIUM vectors were used. |
GR00335-A |
43673 |
FBgn0002413 |
dco |
JF02800 |
np |
none |
|
|
|
Germline stem cell (GSC) regulation |
A Regulatory Network of Drosophila Germline Stem Cell Self-Renewal |
Yan et al. |
2014 |
24576427 |
Tissue |
MTD-GAL4 or UAS-dcr2; nanos-GAL4 |
Spectrin and vasa protein expression |
Fluorescence |
TRiP |
Selected genes |
UAS-IR construct |
Visual inspection |
np |
More detailed phenotypes for some genes are shown in the comment. Various VALIUM vectors were used. |
GR00335-A |
43673 |
FBgn0002413 |
dco |
HM04075 |
np |
none |
|
|
|
Germline stem cell (GSC) regulation |
A Regulatory Network of Drosophila Germline Stem Cell Self-Renewal |
Yan et al. |
2014 |
24576427 |
Tissue |
MTD-GAL4 or UAS-dcr2; nanos-GAL4 |
Spectrin and vasa protein expression |
Fluorescence |
TRiP |
Selected genes |
UAS-IR construct |
Visual inspection |
np |
More detailed phenotypes for some genes are shown in the comment. Various VALIUM vectors were used. |
|
43673 |
FBgn0002413 |
np |
np |
sp |
none |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
GR00367-S |
43673 |
CG2048 |
|
9241 |
np |
lethal or adult morphology phenotype |
|
|
VDRC |
Drosophila airway maturation |
Transient junction anisotropies orient annular cell polarization in the Drosophila airway tubes |
Hosono et al. |
2015 |
26551273 |
Tissue |
btl-GAL4 |
Liquid clearance defect and viability |
Visual inspection |
VDRC, Trip, NIG |
Genome-wide |
UAS-IR construct |
Frequency |
>30% |
|
GR00370-A |
43673 |
FBgn0002413 |
dco |
|
0.84 |
none |
|
|
|
Regulation of Nrf2 homolog CncC |
Cdk12 Is A Gene-Selective RNA Polymerase II Kinase That Regulates a Subset of the Transcriptome, Including Nrf2 Target Genes |
Li et al. |
2016 |
26911346 |
Cell line |
S2 |
CncC reporter |
Luminescence |
HD2 |
Kinases |
dsRNA |
Z-Score |
<-1.65 OR >1.65 |
|
GR00370-A |
43673 |
FBgn0002413 |
dco |
|
1.67 |
Increased CncC (Nrf2) reporter expression |
|
|
|
Regulation of Nrf2 homolog CncC |
Cdk12 Is A Gene-Selective RNA Polymerase II Kinase That Regulates a Subset of the Transcriptome, Including Nrf2 Target Genes |
Li et al. |
2016 |
26911346 |
Cell line |
S2 |
CncC reporter |
Luminescence |
HD2 |
Kinases |
dsRNA |
Z-Score |
<-1.65 OR >1.65 |
|
GR00370-A |
43673 |
FBgn0002413 |
dco |
|
1.76 |
Increased CncC (Nrf2) reporter expression |
|
|
|
Regulation of Nrf2 homolog CncC |
Cdk12 Is A Gene-Selective RNA Polymerase II Kinase That Regulates a Subset of the Transcriptome, Including Nrf2 Target Genes |
Li et al. |
2016 |
26911346 |
Cell line |
S2 |
CncC reporter |
Luminescence |
HD2 |
Kinases |
dsRNA |
Z-Score |
<-1.65 OR >1.65 |
|
GR00379-A-1 |
43673 |
CG2048 |
|
9241 |
-0.27481034859926606 |
none |
|
|
No phenotype in egg laying/hatching or larvae in egg laying or larvae |
Stem cell maintenance |
Regulation of Ribosome Biogenesis and Protein Synthesis Controls Germline Stem Cell Differentiation |
Sanchez et al. |
2016 |
26669894 |
Organism |
nanos-GAL4 |
nos and yTub37c mRNA expression |
qPCR |
VDRC |
Selected genes |
UAS-IR construct |
Z-score |
Low: 1 - 2.5; Medium: 2.5 - 4; High: > |
Selected genes are: transcriptome-wide in female Drosophila. Additional phenotypes (egg laying/hatching) noted in the comment section. Subset libraries from VDRC (KK or GD) can be found in a column next to the comment field. |
GR00388-A |
43673 |
CG2048 |
|
GD9241 |
|
none |
|
|
|
Regulation of intestinal stem cells (ISC) |
Genome-wide RNAi Screen Identifies Networks Involved in Intestinal Stem Cell Regulation in Drosophila |
Zeng et al. |
2015 |
25704823 |
Tissue |
act5C-GAL4 |
Viability |
Visual inspection |
VDRC and BDSC |
Genome-wide |
UAS-IR construct |
np |
np |
Lethal transgenic lines identified from the primary screen were crossed with temperature-sensitive esg-GAL4 flies. Phenotypes of ISCs from the dissected midguts are shown in the "Comment" section. |
GR00388-A |
43673 |
CG2048 |
|
BL27719 |
|
Lethal |
|
|
|
Regulation of intestinal stem cells (ISC) |
Genome-wide RNAi Screen Identifies Networks Involved in Intestinal Stem Cell Regulation in Drosophila |
Zeng et al. |
2015 |
25704823 |
Tissue |
act5C-GAL4 |
Viability |
Visual inspection |
VDRC and BDSC |
Genome-wide |
UAS-IR construct |
np |
np |
Lethal transgenic lines identified from the primary screen were crossed with temperature-sensitive esg-GAL4 flies. Phenotypes of ISCs from the dissected midguts are shown in the "Comment" section. |