| GR00018-A-0 |
57030 |
|
SLC17A7 |
v2HS_243817 |
-0.97 (0.08) |
Synthetic lethal with Ras |
|
no |
|
Synthetic lethal interaction with Ras |
A genome-wide RNAi screen identifies multiple synthetic lethal interactions with the Ras oncogene. |
Luo et al. |
2009 |
19490893 |
Cell line |
DLD-1 |
Synthetic lethal interaction with Ras |
Micoarray hybridization |
shRNA-mir (G. Hannon) |
|
shRNA |
Log2 diff MUT-WT (and P-value) |
-0.7 (0.3) |
|
GR00053-A |
57030 |
NM_020309 |
SLC17A7 |
np |
sp |
Increased gamma-H2AX phosphorylation |
|
no |
group 2 |
Genome stability |
A genome-wide siRNA screen reveals diverse cellular processes and pathways that mediate genome stability. |
Paulsen et al. |
2009 |
19647519 |
Cell line |
HeLa |
gamma-H2AX phosphorylation and DNA content |
Fluorescence |
siARRAY human genome siRNA library |
Genome-wide |
siRNA |
p-value |
Complex criteria |
Confidence groupings from 4 to 1 (highest level of confidence in group 4) |
GR00054-A |
57030 |
NM_020309 |
SLC17A7 |
np |
0.787 |
none |
|
no |
|
Combinatorial effect with paclitaxel |
Synthetic lethal screen identification of chemosensitizer loci in cancer cells. |
Whitehurst et al. |
2007 |
17429401 |
Cell line |
NCI-H1155 |
Viability (synthetic lethal) |
ATP level |
# G-005000-01 |
Genome-wide |
siRNA |
Paclitaxel/control ratio |
Complex criteria |
Additional information about 87 high-confidence hits |
GR00056-A |
57030 |
NM_020309 |
SLC17A7 |
np |
0.941 |
none |
|
no |
|
Melanogenesis |
Genome-wide siRNA-based functional genomics of pigmentation identifies novel genes and pathways that impact melanogenesis in human cells. |
Ganesan et al. |
2008 |
19057677 |
Cell line |
MNT-1 |
Melanin protein expression and viability |
Absorbance and luminescence |
rp |
Genome-wide |
siRNA |
Normalized absorbance ratio |
> 2 standard deviations below mean |
Additional information about a secondary screen (retest to determine false-positive rate) |
GR00057-A-1 |
57030 |
NM_020309 |
SLC17A7 |
M-007417-00 |
-0.29 |
none |
|
no |
|
Wnt/beta-catenin pathway regulation (1) |
A genome-wide RNAi screen for Wnt/beta-catenin pathway components identifies unexpected roles for TCF transcription factors in cancer. |
Tang et al. |
2008 |
18621708 |
Cell line |
HeLa |
Wnt pathway reporter |
Luminescence |
Human siArray siRNA library |
Genome-wide |
siRNA |
Z-score |
> 4 |
Screen without Wnt3A stimulation. Additional information about secondary screens (Dharmacon and Qiagen libraries). |
GR00057-A-2 |
57030 |
NM_020309 |
SLC17A7 |
M-007417-00 |
sp |
none |
|
no |
|
Wnt/beta-catenin pathway regulation (2) |
A genome-wide RNAi screen for Wnt/beta-catenin pathway components identifies unexpected roles for TCF transcription factors in cancer. |
Tang et al. |
2008 |
18621708 |
Cell line |
HeLa |
Wnt pathway reporter |
Luminescence |
Human siArray siRNA library |
Genome-wide |
siRNA |
Complex, SP |
Complex criteria |
Screen with Wnt3A stimulation. Additional information about secondary screens (Dharmacon and Qiagen libraries). |
GR00098-A-1 |
57030 |
ENSG00000104888 |
SLC17A7 |
ENSG00000104888 |
sp |
none |
|
no |
|
Cell division (1) |
Genome-scale RNAi profiling of cell division in human tissue culture cells. |
Kittler et al. |
2007 |
17994010 |
Cell line |
HeLa |
Cell number and DNA content |
Laser scanning cytometry |
rp |
Genome-wide |
esiRNA |
Complex, sp |
Complex criteria |
|
GR00149-A-1 |
57030 |
57030 |
SLC17A7 |
28254 |
1.68 |
none |
|
no |
|
Ciliogenesis and cilium length (1) |
Functional genomic screen for modulators of ciliogenesis and cilium length. |
Kim et al. |
2010 |
20393563 |
Cell line |
htRPE |
Smoothed protein expression |
Fluorescence |
Human druggable genome siRNA library V3.1 |
Druggable genes |
siRNA |
Normalized percent inhibition |
> 1.5 OR < -1.5 standard deviations from mean |
|
GR00149-A-1 |
57030 |
57030 |
SLC17A7 |
28254 |
-39.76 |
none |
|
no |
|
Ciliogenesis and cilium length (1) |
Functional genomic screen for modulators of ciliogenesis and cilium length. |
Kim et al. |
2010 |
20393563 |
Cell line |
htRPE |
Smoothed protein expression |
Fluorescence |
Human druggable genome siRNA library V3.1 |
Druggable genes |
siRNA |
Normalized percent inhibition |
> 1.5 OR < -1.5 standard deviations from mean |
|
GR00149-A-1 |
57030 |
57030 |
SLC17A7 |
117604 |
40.44 |
none |
|
no |
|
Ciliogenesis and cilium length (1) |
Functional genomic screen for modulators of ciliogenesis and cilium length. |
Kim et al. |
2010 |
20393563 |
Cell line |
htRPE |
Smoothed protein expression |
Fluorescence |
Human druggable genome siRNA library V3.1 |
Druggable genes |
siRNA |
Normalized percent inhibition |
> 1.5 OR < -1.5 standard deviations from mean |
|
GR00149-A-1 |
57030 |
57030 |
SLC17A7 |
117604 |
21.77 |
none |
|
no |
|
Ciliogenesis and cilium length (1) |
Functional genomic screen for modulators of ciliogenesis and cilium length. |
Kim et al. |
2010 |
20393563 |
Cell line |
htRPE |
Smoothed protein expression |
Fluorescence |
Human druggable genome siRNA library V3.1 |
Druggable genes |
siRNA |
Normalized percent inhibition |
> 1.5 OR < -1.5 standard deviations from mean |
|
GR00149-A-1 |
57030 |
57030 |
SLC17A7 |
117605 |
-12.06 |
none |
|
no |
|
Ciliogenesis and cilium length (1) |
Functional genomic screen for modulators of ciliogenesis and cilium length. |
Kim et al. |
2010 |
20393563 |
Cell line |
htRPE |
Smoothed protein expression |
Fluorescence |
Human druggable genome siRNA library V3.1 |
Druggable genes |
siRNA |
Normalized percent inhibition |
> 1.5 OR < -1.5 standard deviations from mean |
|
GR00149-A-1 |
57030 |
57030 |
SLC17A7 |
117605 |
13.03 |
none |
|
no |
|
Ciliogenesis and cilium length (1) |
Functional genomic screen for modulators of ciliogenesis and cilium length. |
Kim et al. |
2010 |
20393563 |
Cell line |
htRPE |
Smoothed protein expression |
Fluorescence |
Human druggable genome siRNA library V3.1 |
Druggable genes |
siRNA |
Normalized percent inhibition |
> 1.5 OR < -1.5 standard deviations from mean |
|
GR00151-A-1 |
57030 |
ENSG00000104888 |
SLC17A7 |
np |
0.282 |
none |
|
no |
|
Homologous recombination DNA double-strand break repair (HR-DSBR) (1) |
A genome-scale DNA repair RNAi screen identifies SPG48 as a novel gene associated with hereditary spastic paraplegia. |
Słabicki et al. |
2010 |
20613862 |
Cell line |
HeLa |
(HR-DSBR) DR-GFP reporter |
Flow cytometry |
Custom-made |
Genome-wide |
esiRNA |
Z-score |
< -2 OR > 2 |
|
GR00180-A-1 |
57030 |
57030 |
SLC17A7 |
PL-50062 |
0.919 |
none |
|
no |
|
Hepatitis C virus replication (1) |
A functional genomic screen identifies cellular cofactors of hepatitis C virus replication. |
Tai et al. |
2009 |
19286138 |
Cell line |
Huh7/Rep-Feo |
HCV replicon RNA copy number |
Luminescence |
siARRAY Human Genome siRNA Library |
Genome-wide |
siRNA |
q-value |
Complex criteria |
|
GR00184-A-1 |
57030 |
NM_020309 |
SLC17A7 |
M-007417-00 |
-0.912465244426528 |
none |
|
no |
|
Self-renewal and pluripotency in human embryonic stem cells (1) |
A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity. |
Chia et al. |
2010 |
20953172 |
Cell line |
hESC H1 |
POU5F1 protein expression |
Fluorescence |
SMARTpool siRNA library |
Genome-wide |
siRNA |
Z-score |
< -2 |
|
GR00196-A-1 |
57030 |
ENSG00000104888 |
|
np |
sp |
none |
|
no |
|
TP53 interactions (1) |
A systematic RNAi synthetic interaction screen reveals a link between p53 and snoRNP assembly. |
Krastev et al. |
2011 |
21642980 |
Cell line |
HCT116 ( wildtype and TP53 knockout) |
TP53 protein expression and viability |
Fluorescence |
rp |
Genome-wide |
esiRNA |
Complex, sp |
Complex criteria |
|
GR00197-A-1 |
57030 |
57030 |
SLC17A7 |
M-007417-00 |
0.375457361 |
none |
|
no |
|
Human papillomavirus oncogene expression regulation (1) |
Genome-wide siRNA screen identifies SMCX, EP400, and Brd4 as E2-dependent regulators of human papillomavirus oncogene expression. |
Smith et al. |
2010 |
20133580 |
Cell line |
C33A/BE2/18LCR c4 |
HPV18 LCR reporter activity |
Luminescence |
Human siGENOME SMARTpool library |
Genome-wide |
siRNA |
Z-score |
> |
Author-submitted data. Phenotype strength according to Z-scores: weak: 2 - 3; moderate: 3 - 5; strong: > 5 |
GR00236-A-1 |
57030 |
57030 |
SLC17A7 |
M-007417-00 |
1.44898439332073 |
none |
|
no |
|
Homologous recombination DNA double-strand break repair (HR-DSBR) (1) |
A genome-wide homologous recombination screen identifies the RNA-binding protein RBMX as a component of the DNA-damage response. |
Adamson et al. |
2012 |
22344029 |
Cell line |
DR-U2OS |
(HR-DSBR) DR-GFP reporter and DNA content |
Fluorescence |
Human siGENOME siRNA (G-005000-05) |
Genome-wide |
siRNA |
Relative HR ratio |
< ~0.4 OR > 1.88 |
Cutoff values correspond 2 standard deviations from the screen-wide mean |
GR00240-S-1 |
57030 |
NM_020309 |
SLC17A7 |
M-007417-00 |
-0.48 |
none |
|
yes |
|
TRAIL-induced apoptosis (1) |
A synthetic lethal screen identifies FAT1 as an antagonist of caspase-8 in extrinsic apoptosis. |
Kranz and Boutros |
2014 |
24442637 |
Cell line |
U251MG |
Viability |
Luminescence |
SMART-pool siRNA |
Genome-wide |
siRNA |
Z-score |
> 4 |
Author-submitted data |
GR00240-S-2 |
57030 |
NM_020309 |
SLC17A7 |
M-007417-00 |
-0.1 |
none |
|
no |
Z-score -0.5755 |
TRAIL-induced apoptosis (2) |
A synthetic lethal screen identifies FAT1 as an antagonist of caspase-8 in extrinsic apoptosis. |
Kranz and Boutros |
2014 |
24442637 |
Cell line |
U251MG |
Viability (synthetic lethal) |
Luminescence |
SMART-pool siRNA |
Genome-wide |
siRNA |
Differential score |
> 3.6 AND viability Z-score < 4 |
Author-submitted data. Z-scores from viability screen (1) are considered in score interpretation for this screen. |
GR00242-A-1 |
57030 |
NM_020309 |
SLC17A7 |
np |
np |
none |
|
no |
|
Selective autophagy regulation (1) |
Image-based genome-wide siRNA screen identifies selective autophagy factors. |
Orvedahl et al. |
2011 |
22020285 |
Cell line |
HeLa/GFP-LC3 |
Sindbis virus (SIN) capsid SIN-mCherry.capsid and autophagosome GFP–LC3 protein expression |
Fluorescence |
siGenome |
Genome-wide |
siRNA |
Z-score |
Complex criteria |
|
GR00247-A-1 |
57030 |
|
SLC17A7 |
np |
sp |
none |
|
|
rank: 1352 |
Regulation of FOXO1 nuclear localization (1) |
Whole genome siRNA cell-based screen links mitochondria to Akt signaling network through uncoupling of electron transport chain. |
Senapedis et al. |
2011 |
21460183 |
Cell line |
U2OS |
EGFP-FOXO1a protein expression and DNA content |
Fluorescence |
Human Genome library |
Genome-wide |
siRNA |
Complex, sp |
Complex criteria |
|
GR00249-S |
57030 |
57030 |
SLC17A7 |
s32602 |
-0.15008 |
none |
|
no |
number of cells compared to control (%): 63.74 |
Vaccinia virus (VACV) infection |
Human genome-wide RNAi screen reveals a role for nuclear pore proteins in poxvirus morphogenesis. |
Sivan et al. |
2013 |
23401514 |
Cell line |
HeLa |
Vaccinia virus VACV IHD-J/GFP protein expression and DNA content |
Fluorescence |
Silencer Select Version 4, siGENOME SMARTpool and OnTargetPlus |
Genome-wide |
siRNA |
Z-score |
> |
Author-submitted data. Primary screen. Decreased viability phenotype if number of cells compared to control < 50 %. |
GR00249-S |
57030 |
57030 |
SLC17A7 |
J-007417-09 |
-1.66468 |
Decreased vaccinia virus (VACV) infection |
|
no |
number of cells compared to control (%): 77.70 |
Vaccinia virus (VACV) infection |
Human genome-wide RNAi screen reveals a role for nuclear pore proteins in poxvirus morphogenesis. |
Sivan et al. |
2013 |
23401514 |
Cell line |
HeLa |
Vaccinia virus VACV IHD-J/GFP protein expression and DNA content |
Fluorescence |
Silencer Select Version 4, siGENOME SMARTpool and OnTargetPlus |
Genome-wide |
siRNA |
Z-score |
> |
Author-submitted data. Primary screen. Decreased viability phenotype if number of cells compared to control < 50 %. |
GR00249-S |
57030 |
57030 |
SLC17A7 |
M-007417-00 |
-1.10076 |
none |
|
no |
number of cells compared to control (%): 57.88 |
Vaccinia virus (VACV) infection |
Human genome-wide RNAi screen reveals a role for nuclear pore proteins in poxvirus morphogenesis. |
Sivan et al. |
2013 |
23401514 |
Cell line |
HeLa |
Vaccinia virus VACV IHD-J/GFP protein expression and DNA content |
Fluorescence |
Silencer Select Version 4, siGENOME SMARTpool and OnTargetPlus |
Genome-wide |
siRNA |
Z-score |
> |
Author-submitted data. Primary screen. Decreased viability phenotype if number of cells compared to control < 50 %. |
GR00249-S |
57030 |
57030 |
SLC17A7 |
s32600 |
0.25369 |
none |
|
no |
number of cells compared to control (%): 91.26 |
Vaccinia virus (VACV) infection |
Human genome-wide RNAi screen reveals a role for nuclear pore proteins in poxvirus morphogenesis. |
Sivan et al. |
2013 |
23401514 |
Cell line |
HeLa |
Vaccinia virus VACV IHD-J/GFP protein expression and DNA content |
Fluorescence |
Silencer Select Version 4, siGENOME SMARTpool and OnTargetPlus |
Genome-wide |
siRNA |
Z-score |
> |
Author-submitted data. Primary screen. Decreased viability phenotype if number of cells compared to control < 50 %. |
GR00249-S |
57030 |
57030 |
SLC17A7 |
s32601 |
-0.40538 |
none |
|
no |
number of cells compared to control (%): 79.72 |
Vaccinia virus (VACV) infection |
Human genome-wide RNAi screen reveals a role for nuclear pore proteins in poxvirus morphogenesis. |
Sivan et al. |
2013 |
23401514 |
Cell line |
HeLa |
Vaccinia virus VACV IHD-J/GFP protein expression and DNA content |
Fluorescence |
Silencer Select Version 4, siGENOME SMARTpool and OnTargetPlus |
Genome-wide |
siRNA |
Z-score |
> |
Author-submitted data. Primary screen. Decreased viability phenotype if number of cells compared to control < 50 %. |
GR00253-A |
57030 |
NM_020309 |
SLC17A7 |
np |
-0.686 |
none |
|
|
|
hepcidin regulation |
Unbiased RNAi screen for hepcidin regulators links hepcidin suppression to proliferative Ras/RAF and nutrient-dependent mTOR signaling. |
Mleczko-Sanecka et al. |
2014 |
24385536 |
Cell line |
Huh7 |
hepcidin::fluc mRNA expression |
Luminescence |
siGenome siARRAY SMARTpool |
Genome-wide |
siRNA |
Z-score |
> |
Cutoff < |
GR00255-A-1 |
57030 |
57030 |
SLC17A7 |
TRCN0000043188, TRCN0000043189, TRCN0000043190, TRCN0000043191, TRCN0000043192 |
0.937345627 |
none |
|
|
|
Negative genetic interactions (1) |
A negative genetic interaction map in isogenic cancer cell lines reveals cancer cell vulnerabilities. |
Vizeacoumar et al. |
2013 |
24104479 |
Cell line |
HCT116 |
shRNA abundance |
Microarray |
np |
Genome-wide |
shRNA |
differential Gene Activity Ranking Profile (dGARP) |
< -1.0 |
HCT116 BLM-/- and HCT116 BLM+/+ cells used. Cutoff corresponds to p-value < 0.05. Additional information about a secondary screen (genetic interactions with Cetuximab/Erbitux in LIM1215 cells) |
GR00255-A-2 |
57030 |
57030 |
SLC17A7 |
TRCN0000043188, TRCN0000043189, TRCN0000043190, TRCN0000043191, TRCN0000043192 |
0.680228729 |
none |
|
|
|
Negative genetic interactions (2) |
A negative genetic interaction map in isogenic cancer cell lines reveals cancer cell vulnerabilities. |
Vizeacoumar et al. |
2013 |
24104479 |
Cell line |
HCT116 |
shRNA abundance |
Microarray |
np |
Genome-wide |
shRNA |
differential Gene Activity Ranking Profile (dGARP) |
< -1.0 |
HCT116 MUS81-/- and HCT116 MUS81+/+ cells used. Cutoff corresponds to p-value < 0.05. Additional information about a secondary screen (genetic interactions with Cetuximab/Erbitux in LIM1215 cells) |
GR00255-A-3 |
57030 |
57030 |
SLC17A7 |
TRCN0000043188, TRCN0000043189, TRCN0000043190, TRCN0000043191, TRCN0000043192 |
-0.200605975 |
none |
|
|
|
Negative genetic interactions (3) |
A negative genetic interaction map in isogenic cancer cell lines reveals cancer cell vulnerabilities. |
Vizeacoumar et al. |
2013 |
24104479 |
Cell line |
HCT116 |
shRNA abundance |
Microarray |
np |
Genome-wide |
shRNA |
differential Gene Activity Ranking Profile (dGARP) |
< -1.2 |
HCT116 PTEN-/- and HCT116 PTEN+/+ cells used. Cutoff corresponds to p-value < 0.05. Additional information about a secondary screen (genetic interactions with Cetuximab/Erbitux in LIM1215 cells) |
GR00255-A-4 |
57030 |
57030 |
SLC17A7 |
TRCN0000043188, TRCN0000043189, TRCN0000043190, TRCN0000043191, TRCN0000043192 |
0.383569993 |
none |
|
|
|
Negative genetic interactions (4) |
A negative genetic interaction map in isogenic cancer cell lines reveals cancer cell vulnerabilities. |
Vizeacoumar et al. |
2013 |
24104479 |
Cell line |
HCT116 |
shRNA abundance |
Microarray |
np |
Genome-wide |
shRNA |
differential Gene Activity Ranking Profile (dGARP) |
< -1.2 |
HCT116 PTTG1-/- and HCT116 PTTG1+/+ cells used. Cutoff corresponds to p-value < 0.05. Additional information about a secondary screen (genetic interactions with Cetuximab/Erbitux in LIM1215 cells) |
GR00255-A-5 |
57030 |
57030 |
SLC17A7 |
TRCN0000043188, TRCN0000043189, TRCN0000043190, TRCN0000043191, TRCN0000043192 |
-1.495244 |
Negative genetic interaction between KRASG13D/+ and KRAS+/- |
|
|
|
Negative genetic interactions (5) |
A negative genetic interaction map in isogenic cancer cell lines reveals cancer cell vulnerabilities. |
Vizeacoumar et al. |
2013 |
24104479 |
Cell line |
HCT116 |
shRNA abundance |
Microarray |
np |
Genome-wide |
shRNA |
differential Gene Activity Ranking Profile (dGARP) |
< -0.8 |
HCT116 KRASG13D/- and HCT116 KRAS+/- cells used. Cutoff corresponds to p-value < 0.05. Additional information about a secondary screen (genetic interactions with Cetuximab/Erbitux in LIM1215 cells) |
GR00293-A |
57030 |
|
SLC17A7 |
np |
0.272 |
none |
|
|
|
Combinatorial effect with paclitaxel |
Mechanisms Promoting Escape from Mitotic Stress−Induced Tumor Cell Death |
Sinnott et al. |
2014 |
24860162 |
Cell line |
HCC366 |
Viability |
Luminescence |
Thermo-Fisher |
Genome-wide |
siRNA |
Z-score |
< -2.5 |
Final hits according to the author are indicated in the comment. |
GR00297-A |
57030 |
|
SLC17A7 |
TRCN0000043189 |
0.09 |
none |
|
|
|
Glucose limitation response |
Metabolic determinants of cancer cell sensitivity to glucose limitation and biguanides |
Birsoy et al. |
2014 |
24670634 |
Cell line |
Jurkat |
shRNA abundance in high and low glucose |
Deep sequencing |
TRC |
Selected genes |
shRNA |
Log2 ratio |
< -0.75 |
|
GR00297-A |
57030 |
|
SLC17A7 |
TRCN0000043190 |
0.73 |
none |
|
|
|
Glucose limitation response |
Metabolic determinants of cancer cell sensitivity to glucose limitation and biguanides |
Birsoy et al. |
2014 |
24670634 |
Cell line |
Jurkat |
shRNA abundance in high and low glucose |
Deep sequencing |
TRC |
Selected genes |
shRNA |
Log2 ratio |
< -0.75 |
|
GR00297-A |
57030 |
|
SLC17A7 |
TRCN0000043191 |
0.62 |
none |
|
|
|
Glucose limitation response |
Metabolic determinants of cancer cell sensitivity to glucose limitation and biguanides |
Birsoy et al. |
2014 |
24670634 |
Cell line |
Jurkat |
shRNA abundance in high and low glucose |
Deep sequencing |
TRC |
Selected genes |
shRNA |
Log2 ratio |
< -0.75 |
|
GR00297-A |
57030 |
|
SLC17A7 |
TRCN0000043192 |
0.11 |
none |
|
|
|
Glucose limitation response |
Metabolic determinants of cancer cell sensitivity to glucose limitation and biguanides |
Birsoy et al. |
2014 |
24670634 |
Cell line |
Jurkat |
shRNA abundance in high and low glucose |
Deep sequencing |
TRC |
Selected genes |
shRNA |
Log2 ratio |
< -0.75 |
|
GR00300-A |
57030 |
|
SLC17A7 |
TRCN0000043192, TRCN0000043191, TRCN0000043190, TRCN0000043189, TRCN0000043188 |
0 |
none |
|
|
|
Combinatorial effect with RAF inhibitor PLX4720 |
A genome-scale RNA interference screen implicates NF1 loss in resistance to RAF inhibition. |
Whittaker et al. |
2013 |
23288408 |
Cell line |
A375 |
shRNA abundance |
Sequencing |
TRC |
Genome-wide |
shRNA |
Number of shRNAs ranked Top1000 |
> 2 |
The A375 cell line used here harbours the BRAF V600E mutation and is therefore sensitive to RAF inhibitors. |
GR00303-A |
57030 |
NM_020309 |
SLC17A7 |
np |
0.38 |
none |
|
|
|
Clear cell renal cell carcinoma (ccRCC) survival regulation |
Genome-wide RNA interference analysis of renal carcinoma survival regulators identifies MCT4 as a Warburg effect metabolic target |
Gerlinger et al. |
2012 |
22362593 |
Cell line |
VHL-deficient RCC4 |
Proliferation and Viability |
Fluorescence |
np |
Genome-wide |
siRNA |
Z-score |
< |
In the phenotype data duplicates were in the original document, which have been removed. |
GR00310-A-1 |
57030 |
57030 |
SLC17A7 |
np |
-1.41 |
none |
|
|
|
Sindbis virus (SINV) infection (1) |
Genome-Wide RNAi Screen Identifies Novel Host Proteins Required for Alphavirus Entry |
Ooi et al. |
2013 |
24367265 |
Cell line |
U2OS |
Sindbis virus (SINV) reporter |
Luminescence |
Ambion Silencer V3 |
Genome-wide |
siRNA |
Z-score |
< -3 OR > 2 |
|
|
57030 |
57030 |
SLC17A7 |
np |
18 |
none |
|
|
86,4% viability |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
GR00313-A |
57030 |
NM_020309 |
SLC17A7 |
np |
-0.41 |
none |
|
|
|
TNF-alpha pathway regulation |
A Genome-Wide RNA Interference Screen Identifies Caspase 4 as a Factor Required for Tumor Necrosis Factor Alpha Signaling. |
Nickles et al. |
2012 |
22733992 |
Cell line |
HEK293T |
NFkappaB pathway reporter |
Luminescence |
Qiagen |
Genome-wide |
siRNA |
Z-score |
< |
Additional filters were a reduction in firefly luciferase levels by at least 50% compared to the mean of the experiment and a concomitant reduction of renilla luciferase expression of not more than 30%. |
GR00343-S |
57030 |
57030 |
SLC17A7 |
TRCN0000043189 |
0.504999999999999 |
none |
|
|
|
Lentiviral shRNA "Achilles Heel" screen |
Inhibition of the mitochondrial protease, ClpP, as a therapeutic strategy for human acute myeloid leukemia |
Cole et al. |
2015 |
26058080 |
Cell line |
K562 |
shRNA abundance |
Fluorescence |
Lentiviral shRNA library |
Genome-wide |
shRNA |
Log2 ratio |
< |
Comparison of day 21 vs. day 0 abundance data |
GR00343-S |
57030 |
57030 |
SLC17A7 |
TRCN0000043188 |
0.7174999999999994 |
none |
|
|
|
Lentiviral shRNA "Achilles Heel" screen |
Inhibition of the mitochondrial protease, ClpP, as a therapeutic strategy for human acute myeloid leukemia |
Cole et al. |
2015 |
26058080 |
Cell line |
K562 |
shRNA abundance |
Fluorescence |
Lentiviral shRNA library |
Genome-wide |
shRNA |
Log2 ratio |
< |
Comparison of day 21 vs. day 0 abundance data |
GR00343-S |
57030 |
57030 |
SLC17A7 |
TRCN0000043192 |
0.75 |
none |
|
|
|
Lentiviral shRNA "Achilles Heel" screen |
Inhibition of the mitochondrial protease, ClpP, as a therapeutic strategy for human acute myeloid leukemia |
Cole et al. |
2015 |
26058080 |
Cell line |
K562 |
shRNA abundance |
Fluorescence |
Lentiviral shRNA library |
Genome-wide |
shRNA |
Log2 ratio |
< |
Comparison of day 21 vs. day 0 abundance data |
GR00343-S |
57030 |
57030 |
SLC17A7 |
TRCN0000043190 |
-1.2375000000000007 |
shRNA abundance <= 50% |
|
|
|
Lentiviral shRNA "Achilles Heel" screen |
Inhibition of the mitochondrial protease, ClpP, as a therapeutic strategy for human acute myeloid leukemia |
Cole et al. |
2015 |
26058080 |
Cell line |
K562 |
shRNA abundance |
Fluorescence |
Lentiviral shRNA library |
Genome-wide |
shRNA |
Log2 ratio |
< |
Comparison of day 21 vs. day 0 abundance data |
GR00343-S |
57030 |
57030 |
SLC17A7 |
TRCN0000043191 |
-0.2524999999999995 |
none |
|
|
|
Lentiviral shRNA "Achilles Heel" screen |
Inhibition of the mitochondrial protease, ClpP, as a therapeutic strategy for human acute myeloid leukemia |
Cole et al. |
2015 |
26058080 |
Cell line |
K562 |
shRNA abundance |
Fluorescence |
Lentiviral shRNA library |
Genome-wide |
shRNA |
Log2 ratio |
< |
Comparison of day 21 vs. day 0 abundance data |
GR00363-A |
57030 |
57030 |
SLC17A7 |
SI00720797, esi2918, SI00720790, SI00720783, 117603, 117604, 117605, SI00720804 |
sp |
Decreased epidermal growth factor (EGF) endocytosis, decreased transferrin (TF) endocytosis |
|
|
strong |
Endocytosis regulation |
Systems survey of endocytosis by multiparametric image analysis. |
Collinet et al. |
2010 |
20190736 |
Cell line |
HeLa |
Transferrin (TF) and epidermal growth factor (EGF) subcellular localisation, DNA content |
Fluorescence |
Ambion, Qiagen and esiRNA library (Kittler et al.) |
Genome-wide |
siRNA |
Complex, sp |
Complex criteria |
Two hit categories: "strong" (maximum of Prob Chi2, Prob Chi2 EGF, Prob Chi2 Tfn > 0.95) and "weak but specific" (maximum of Prob Chi2, Prob Chi2 EGF, Prob Chi2 Tfn < 0.95 but Phenoscore > 0.95). Additional information about secondary screens with kinase and phospatase libraries. |
GR00366-A-1 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.689964215174947 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (1) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
22RV1_PROSTATE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-10 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-1.19601928274806 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (10) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
ACHN_KIDNEY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-100 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.322894139672031 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (100) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-101 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.374675116509635 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (101) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
LK2_LUNG |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-102 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.445092158007266 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (102) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
LN215_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-103 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.38779921291991 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (103) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
LN229_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-104 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.160710399571102 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (104) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
LN235_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-105 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.721592345194743 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (105) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
LN319_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-106 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.14592830290131 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (106) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
LN340_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-107 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.231357379836617 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (107) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
LN382_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-108 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.33557859676362 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (108) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
LN428_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-109 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.0990621359836255 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (109) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
LN443_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-11 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.633767941517062 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (11) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
AGS_STOMACH |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-110 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.97383294242181 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (110) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
LN464_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-111 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.847560729354039 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (111) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
LNZ308_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-112 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-1.42853672466763 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (112) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
LOVO_LARGE_INTESTINE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-113 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.616653777514782 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (113) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
LS411N_LARGE_INTESTINE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-114 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.352430903101518 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (114) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
LS513_LARGE_INTESTINE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-115 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.44239237284285 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (115) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
MCF7_BREAST |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-116 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.691324817461846 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (116) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
MDAMB453_BREAST |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-117 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.19592817299294 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (117) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
MIAPACA2_PANCREAS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-118 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.409591423407599 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (118) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
MKN7_STOMACH |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-119 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.283230577169406 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (119) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-12 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.836906768531853 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (12) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
AM38_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-120 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.22874733858268 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (120) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-121 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.00376577229844649 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (121) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-122 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.927706726858764 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (122) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-123 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.967361583536654 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (123) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-124 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.338478003426868 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (124) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-125 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.612679852884223 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (125) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-126 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.96368547731385 |
Increased shRNA abundance (Z-score > 2) |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (126) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
NCIH1299_LUNG |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-127 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.0653352897325376 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (127) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
NCIH1437_LUNG |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-128 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
2.28420200812802 |
Increased shRNA abundance (Z-score > 2) |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (128) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
NCIH1650_LUNG |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-129 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.969962568982951 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (129) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
NCIH1792_LUNG |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-13 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.372199468690808 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (13) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-130 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.62633380636756 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (130) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
NCIH196_LUNG |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-131 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.653706336310485 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (131) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
NCIH1975_LUNG |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-132 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-1.56821271423378 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (132) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
NCIH2052_PLEURA |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-133 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.65855620735824 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (133) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
NCIH2122_LUNG |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-134 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.69948711874735 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (134) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
NCIH2171_LUNG |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-135 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.0394692782430798 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (135) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
NCIH23_LUNG |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-136 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.735053081410739 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (136) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
NCIH2452_PLEURA |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-137 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.8984622696063 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (137) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
NCIH441_LUNG |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-138 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.0619954028803137 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (138) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
NCIH508_LARGE_INTESTINE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-139 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.655437570492648 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (139) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
NCIH660_PROSTATE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-14 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.172045645863654 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (14) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
ASPC1_PANCREAS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-140 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.75648647192617 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (140) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
NCIH661_LUNG |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-141 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.217341745726437 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (141) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
NCIH716_LARGE_INTESTINE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-142 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.312538364283995 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (142) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
NCIH838_LUNG |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-143 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.703301976148073 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (143) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
NCIN87_STOMACH |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-144 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.664425000222036 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (144) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
NIHOVCAR3_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-145 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-1.24934963390137 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (145) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-146 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.546649890835242 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (146) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
OAW42_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-147 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.628882661404663 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (147) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-148 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.412641524415367 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (148) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-149 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-1.1637145920271 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (149) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-15 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.686172850376651 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (15) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
BT20_BREAST |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-150 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.0360137657889691 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (150) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
OE33_OESOPHAGUS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-151 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.0715833157771243 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (151) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
OELE_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-152 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.135212395105128 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (152) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-153 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.21218271819181 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (153) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
OV7_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-154 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.173765986827933 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (154) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
OV90_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-155 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.182276346111398 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (155) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
OVCAR4_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-156 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.457825935983932 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (156) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
OVCAR8_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-157 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.320312184546135 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (157) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
OVISE_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-158 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.89640473715757 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (158) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
PANC0327_PANCREAS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-159 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.296252741058912 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (159) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
PANC0813_PANCREAS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-16 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-1.17700825515434 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (16) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
BT474_BREAST |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-160 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.326344271138994 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (160) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
PANC1005_PANCREAS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-161 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.342508756531454 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (161) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-162 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.02773940918286 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (162) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
PSN1_PANCREAS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-163 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.18081523793972 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (163) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
QGP1_PANCREAS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-164 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.449169896316705 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (164) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-165 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.579838375884357 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (165) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
RKN_SOFT_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-166 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.659753253428898 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (166) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
RKO_LARGE_INTESTINE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-167 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.159614253115986 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (167) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
RMGI_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-168 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.8586289216474 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (168) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
RMUGS_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-169 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-1.77655863064113 |
Decreased shRNA abundance (Z-score < -2) |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (169) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-17 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.371214879286321 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (17) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
BXPC3_PANCREAS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-170 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.668637919428118 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (170) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
RT112_URINARY_TRACT |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-171 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.869667268237321 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (171) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-172 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.640369494042482 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (172) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SF126_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-173 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.147036130035844 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (173) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SF172_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-174 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.171622385289212 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (174) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SF295_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-175 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.872084512659054 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (175) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SF767_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-176 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.16205449187017 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (176) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SJSA1_BONE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-177 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-1.09150555056561 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (177) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SKCO1_LARGE_INTESTINE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-178 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-1.80164649889156 |
Decreased shRNA abundance (Z-score < -2) |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (178) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SKMEL5_SKIN |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-179 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.104840397475407 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (179) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-18 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.30022049724079 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (18) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
C2BBE1_LARGE_INTESTINE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-180 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
2.67571856446205 |
Increased shRNA abundance (Z-score > 2) |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (180) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-181 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.690070653725605 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (181) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SKOV3_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-182 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.785789359280105 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (182) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SKRC20_KIDNEY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-183 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.106934520181085 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (183) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SLR20_KIDNEY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-184 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.345880010601443 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (184) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SLR21_KIDNEY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-185 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.26480417897321 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (185) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SLR23_KIDNEY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-186 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.864488527459974 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (186) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SLR24_KIDNEY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-187 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.365303799282497 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (187) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SLR25_KIDNEY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-188 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-1.3014152343356 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (188) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SLR26_KIDNEY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-189 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.424640075806597 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (189) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SNU1105_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-19 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.63339891124924 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (19) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
C32_SKIN |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-190 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
2.52712444178148 |
Increased shRNA abundance (Z-score > 2) |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (190) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SNU840_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-191 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.496406432642476 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (191) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SNUC1_LARGE_INTESTINE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-192 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.632487529063027 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (192) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SNUC2A_LARGE_INTESTINE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-193 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.259983968976565 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (193) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SU8686_PANCREAS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-194 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.193396221674443 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (194) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SW1417_LARGE_INTESTINE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-195 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.00457764513984287 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (195) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SW1783_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-196 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.949779798626858 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (196) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SW480_LARGE_INTESTINE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-197 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.0669843654280028 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (197) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
SW48_LARGE_INTESTINE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-198 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.0850122472967232 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (198) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
T98G_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-199 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-1.03773387097045 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (199) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
TC71_BONE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-2 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.815644257169265 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (2) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-20 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.758301439518099 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (20) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
CADOES1_BONE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-200 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.610564993691487 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (200) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
TCCSUP_URINARY_TRACT |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-201 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.667365644076599 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (201) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
TE10_OESOPHAGUS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-202 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.970229124712158 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (202) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
TE15_OESOPHAGUS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-203 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.491849392746102 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (203) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
TE9_OESOPHAGUS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-204 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.75311957559899 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (204) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-205 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.00912707290805624 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (205) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
TOV112D_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-206 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.75944171052349 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (206) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
TOV21G_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-207 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.757245716088388 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (207) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
TT_OESOPHAGUS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-208 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.454770978963371 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (208) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
TYKNU_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-209 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.866759172792823 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (209) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
U178_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-21 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.585730688054958 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (21) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
CAL120_BREAST |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-210 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.277195909452631 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (210) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
U251MG_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-211 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.108084214020502 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (211) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
U343_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-212 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.68809730182616 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (212) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
U87MG_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-213 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.354177492783591 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (213) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
UOK101_KIDNEY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-214 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.378599168576384 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (214) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
VCAP_PROSTATE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-215 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.619498482305806 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (215) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
YKG1_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-216 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.408025031173187 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (216) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
ZR7530_BREAST |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-22 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.559117025586977 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (22) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
CAL51_BREAST |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-23 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.441588610399591 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (23) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
CALU1_LUNG |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-24 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.149104528998083 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (24) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
CAOV3_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-25 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.219363159483823 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (25) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
CAOV4_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-26 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.345657290230953 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (26) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
CAS1_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-27 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.84555624601963 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (27) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
CFPAC1_PANCREAS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-28 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.74805617123198 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (28) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
CH157MN_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-29 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.429264312420526 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (29) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
COLO205_LARGE_INTESTINE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-3 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.398908588995838 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (3) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
786O_KIDNEY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-30 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.16450992817629 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (30) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
COLO704_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-31 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.675692524822678 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (31) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
COLO741_SKIN |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-32 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-1.09513942305714 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (32) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
COLO783_SKIN |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-33 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.160899521582814 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (33) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
CORL23_LUNG |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-34 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.0896916329224 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (34) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
COV362_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-35 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.26396828855503 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (35) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
COV434_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-36 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.717500826308462 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (36) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
COV504_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-37 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.00920883766398739 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (37) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
COV644_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-38 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-1.08344115699748 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (38) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-39 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.240062635849709 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (39) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
DKMG_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-4 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.379049071599389 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (4) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
A1207_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-40 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.0166785665304733 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (40) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
DLD1_LARGE_INTESTINE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-41 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.82060185249919 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (41) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
EFE184_ENDOMETRIUM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-42 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-1.42916223161268 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (42) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
EFM19_BREAST |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-43 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.69490963155547 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (43) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
EFO21_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-44 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.0189922597605053 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (44) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
EFO27_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-45 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.0605431925683104 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (45) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
EW8_BONE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-46 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.58352645197813 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (46) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
EWS502_BONE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-47 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.825293023343496 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (47) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-48 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.566536444411021 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (48) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
GB1_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-49 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.193530352622375 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (49) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
GP2D_LARGE_INTESTINE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-5 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.156641323338535 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (5) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
A172_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-50 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.858077409382157 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (50) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HCC1187_BREAST |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-51 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.955652161771934 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (51) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HCC1395_BREAST |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-52 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
2.52010566588672 |
Increased shRNA abundance (Z-score > 2) |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (52) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HCC1954_BREAST |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-53 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.00624627613006508 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (53) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HCC2218_BREAST |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-54 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.653625359016088 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (54) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HCC2814_LUNG |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-55 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-1.52698621557792 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (55) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HCC364_LUNG |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-56 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.58845897978256 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (56) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HCC44_LUNG |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-57 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-1.21289300849534 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (57) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HCC70_BREAST |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-58 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.76988394873228 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (58) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HCC827GR5_LUNG |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-59 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.05149331759495 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (59) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HCC827_LUNG |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-6 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.0250163404944367 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (6) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
A204_SOFT_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-60 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
2.07042969429092 |
Increased shRNA abundance (Z-score > 2) |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (60) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HCT116_LARGE_INTESTINE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-61 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.438897854338435 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (61) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HEC1A_ENDOMETRIUM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-62 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.482391717237419 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (62) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HEYA8_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-63 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.0995204385963246 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (63) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-64 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.864246645525494 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (64) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HLF_LIVER |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-65 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.895740382110181 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (65) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-66 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.286027421798316 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (66) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HPAC_PANCREAS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-67 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.884587039431946 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (67) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HPAFII_PANCREAS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-68 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.459325656475144 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (68) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HS683_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-69 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.0777471271854487 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (69) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HS766T_PANCREAS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-7 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.67029381979021 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (7) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
A2058_SKIN |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-70 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.212961359700823 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (70) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HS944T_SKIN |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-71 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.0700512656151599 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (71) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HT1197_URINARY_TRACT |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-72 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.0637746722160414 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (72) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HT29_LARGE_INTESTINE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-73 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
2.5134076493234 |
Increased shRNA abundance (Z-score > 2) |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (73) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HT55_LARGE_INTESTINE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-74 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.51978487985089 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (74) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HUG1N_STOMACH |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-75 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.26177417527804 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (75) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
HUTU80_SMALL_INTESTINE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-76 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.480179606545253 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (76) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
IGR39_SKIN |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-77 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.65112965763252 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (77) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
IGROV1_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-78 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.893366973047165 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (78) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
IOMMLEE_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-79 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.0179047753822624 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (79) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
JHESOAD1_OESOPHAGUS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-8 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-1.89331122122623 |
Decreased shRNA abundance (Z-score < -2) |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (8) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
A549_LUNG |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-80 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.59467782600253 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (80) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
JHOC5_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-81 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.089533851424074 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (81) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
JHOM1_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-82 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.611923233593784 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (82) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-83 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.139812745385864 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (83) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-84 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.9019357624321 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (84) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
KALS1_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-85 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.03613716146698 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (85) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-86 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.0869417905418269 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (86) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
KM12_LARGE_INTESTINE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-87 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.496172819054101 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (87) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-88 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.408187641979927 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (88) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
KNS60_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-89 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.14370018049129 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (89) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
KNS81_CENTRAL_NERVOUS_SYSTEM |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-9 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-1.78546455810177 |
Decreased shRNA abundance (Z-score < -2) |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (9) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
A673_BONE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-90 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.335652197712657 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (90) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
KP1NL_PANCREAS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-91 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.44294451462166 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (91) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
KP2_PANCREAS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-92 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.37537700722347 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (92) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
KP4_PANCREAS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-93 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.0624762793903163 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (93) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
KURAMOCHI_OVARY |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-94 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.143831161593086 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (94) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
KYSE150_OESOPHAGUS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-95 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
1.37671418736018 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (95) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
KYSE30_OESOPHAGUS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-96 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
0.0295195705193311 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (96) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
KYSE450_OESOPHAGUS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-97 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-0.561548663055632 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (97) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
KYSE510_OESOPHAGUS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-98 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-1.23720548962211 |
none |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (98) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
L33_PANCREAS |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
GR00366-A-99 |
57030 |
|
SLC17A7 |
TRCN0000043191, TRCN0000043192 |
-2.00219260880616 |
Decreased shRNA abundance (Z-score < -2) |
|
|
SLC17A7_1_01010 |
Context-specific genetic dependencies (99) |
Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies |
Cowley et al. |
2014 |
25984343 |
Cell line |
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE |
shRNA abundance |
Next-generation sequencing |
TRC |
shRNA |
Genome-wide |
Fold change |
np (default cutoff applied: Z-score > 2 OR < -2) |
Detailed information and analysis options for this large-scale screening project can be found at http://www.broadinstitute.org/achilles. The authors didn't provide a score cutoff - therefore we applied a default cutoff for phenotype assignment. (Note: We didn't confirm normal distribution of the data, so the Z-score cutoff should be interpreted with caution.) |
|
57030 |
57030 |
SLC17A7 |
|
-0.17000000000000004 |
none |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
GR00376-A-1 |
57030 |
57030 |
SLC17A7 |
|
0.025839268 |
none |
|
|
|
Mitigators of SS1P-induced immunotoxicity |
Whole-genome RNAi screen highlights components of the endoplasmic reticulum/Golgi as a source of resistance to immunotoxin-mediated cytotoxicity |
Pasetto et al. |
2015 |
25713356 |
Cell line |
KB cells |
Viability |
Luminescence |
Ambion Silencer Select Version 4 |
Genome-wide |
siRNA |
RSA P-value |
<0.001 |
SS1P was applied in a "high dose", ≈EC90, 13 ng/ml. Cutoff was derived from data submitted to Pubchem (ID 1117281). Reagent sequences but no ID |
GR00376-A-2 |
57030 |
57030 |
SLC17A7 |
|
0.199942904 |
none |
|
|
|
Sensitizers of SS1P-induced immunotoxicity |
Whole-genome RNAi screen highlights components of the endoplasmic reticulum/Golgi as a source of resistance to immunotoxin-mediated cytotoxicity |
Pasetto et al. |
2015 |
25713356 |
Cell line |
KB cells |
Viability |
Luminescence |
Ambion Silencer Select Version 4 |
Genome-wide |
siRNA |
RSA P-value |
<0.001 |
SS1P was applied in a "low dose", ≈EC30, 3 ng/ml. Cutoff was derived from data submitted to PubChem (ID 1117281). Reagent sequences but no ID |
GR00378-A |
57030 |
|
SLC17A7 |
|
-1.763555912 |
none |
|
|
|
Poliovirus vaccine production |
Engineering Enhanced Vaccine Cell Lines To Eradicate Vaccine-Preventable Diseases: the Polio End Game |
van der Sanden et al. |
2015 |
26581994 |
Cell line |
HEp-2C |
Infection with Attenuated Poliovirus |
ELISA |
Dharmacon |
Genome-wide |
siRNA |
Z-score |
> |
For infection, a single lot of the attenuated Sabin type 2 poliovirus was used for the screen. Gene IDs were not provided, only the gene name/symbol |
|
57030 |
NM_020309 |
SLC17A7 |
|
28.61 |
none |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
GR00386-A-1 |
57030 |
57030 |
SLC17A7 |
|
83.5828515253074 |
none |
|
|
|
NOD2 stimulation by MDP |
A genome-wide small interfering RNA (siRNA) screen reveals nuclear factor-κB (NF-κB)-independent regulators of NOD2-induced interleukin-8 (IL-8) secretion. |
Warner et al. |
2014 |
25170077 |
Cell line |
HEK293 stably expressing NOD2 |
Viability |
Luminescence |
Dharmacon |
Genome-wide |
siRNA |
Percentage growth |
Decreased: <70, increased: >120 |
Reagent IDs not provided |
GR00386-A-2 |
57030 |
57030 |
SLC17A7 |
|
-182.9 |
none |
|
|
|
MDP-induced IL-8 secretion |
A genome-wide small interfering RNA (siRNA) screen reveals nuclear factor-κB (NF-κB)-independent regulators of NOD2-induced interleukin-8 (IL-8) secretion. |
Warner et al. |
2014 |
25170077 |
Cell line |
HEK293 stably expressing NOD2 |
IL-8 secretion |
ELISA |
Dharmacon |
Genome-wide |
siRNA |
Percent inhibition of IL-8 secretion |
Increased: <-300, Decreased: >60 |
Concentration of IL-8 was measured from cell supernatants by sandwich ELISA. IL-8 values (pg/ml) were normalized to IL-8 secreted in cells treated with RIPK2-specific siRNA (100% inhibition) and non-targeting siRNA (0% inhibition). Secondary validating screen assessed 554 genes whose silencing affected MDP-induced IL-8 secretion in the primary screen. Final validated IL-8 regulators (positive or negative) are listed in the comments column. Reagent IDs not provided |