Crispr

Gene Info

  • Species:Human (Homo sapiens)
  • GeneID:6839
  • Symbol:SUV39H1
  • Description:suppressor of variegation 3-9 homolog 1
DataSource: http://genomecrispr.dkfz.de/#!/results/SUV39H1

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Start The end chr strand pubmed cellline condition sequence symbol ensg log2fc rc_initial rc_final effect cas screentype index
48695834 48695857 X + 26627737 DLD1 viability TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 0.7897432912675816 [270] [146,207,94] 7 hSpCas9 negative selection 845819
48695834 48695857 X + 26627737 GBM cells viability after 5 days TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 0.3895964275074228 [273] [209,174] 6 hSpCas9 negative selection 928134
48695834 48695857 X + 26627737 GBM cells viability after 13 days TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 0.7162857925863062 [273] [187,289] 8 hSpCas9 negative selection 1010449
48695834 48695857 X + 26627737 GBM cells viability after 21 days TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 0.8616860004819471 [273] [293,248] 8 hSpCas9 negative selection 1092764
48695834 48695857 X + 26627737 RPE1 viability after 9 days TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 1.4896010847976333 [637] [504,632] 8 hSpCas9 negative selection 1175079
48695834 48695857 X + 26627737 RPE1 viability after 12 days TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 1.1805226353513354 [637] [371,405] 7 hSpCas9 negative selection 1257394
48695834 48695857 X + 26627737 RPE1 viability after 15 days TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 1.2215241610332255 [637] [456,385] 7 hSpCas9 negative selection 1339709
48695834 48695857 X + 26627737 RPE1 viability after 18 days TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 1.2727611073756933 [637] [401,430] 7 hSpCas9 negative selection 1422024
48695834 48695857 X + 26627737 HeLa viability after 8 days TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 0.7355566375402253 [379] [341,302,200] 6 hSpCas9 negative selection 1504339
48695834 48695857 X + 26627737 HeLa viability after 12 days TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 0.176495510348839 [379] [261,166,106] 1 hSpCas9 negative selection 1586654
48695834 48695857 X + 26627737 HeLa viability after 15 days TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 0.5117982766362462 [379] [176,243,242] 4 hSpCas9 negative selection 1668969
48695834 48695857 X + 26627737 HeLa viability after 18 days TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 0.5010254238731426 [379] [117,198,242] 4 hSpCas9 negative selection 1751284
48695834 48695857 X + 26627737 HCT116 viability after 6 days TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 -0.20136109913892136 [810] [262,26] -1 hSpCas9 negative selection 1833599
48695834 48695857 X + 26627737 HCT116 viability after 8 days TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 -0.4068033692106501 [397] [112,106,273] -5 hSpCas9 negative selection 1915914
48695834 48695857 X + 26627737 HCT116 viability after 9 days TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 -0.29898898573368327 [810] [337,47] -2 hSpCas9 negative selection 1998229
48695834 48695857 X + 26627737 HCT116 viability after 12 days TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 -0.6598105033332318 [397] [119,162,115] -6 hSpCas9 negative selection 2080544
48695834 48695857 X + 26627737 HCT116 viability after 15 days TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 0.3798170321163445 [397] [294,138,455] 3 hSpCas9 negative selection 2162859
48695834 48695857 X + 26627737 HCT116 viability after 18 days TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 -0.6433638725043664 [397] [117,112,139] -5 hSpCas9 negative selection 2245174
48698898 48698921 X - 24336569 HL60 viability TTGCAACACACGCTGCAGCCTGG SUV39H1 ENSG00000101945 0.8627250364025977 [335] [1292] 7 hSpCas9 negative selection 2298391
48698908 48698931 X + 24336569 HL60 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.9912922418064178 [144] [609] 7 hSpCas9 negative selection 2298392
48698921 48698944 X + 24336569 HL60 viability GTCTTCTTGGAATCAGCTGCAGG SUV39H1 ENSG00000101945 1.8190002258201892 [194] [1455] 9 hSpCas9 negative selection 2298393
48698936 48698959 X + 24336569 HL60 viability GCTGCAGGACCTGTGCCGCCTGG SUV39H1 ENSG00000101945 0.17822686213052702 [539] [1292] 1 hSpCas9 negative selection 2298394
48698898 48698921 X - 24336569 KBM7 viability TTGCAACACACGCTGCAGCCTGG SUV39H1 ENSG00000101945 0.5685856228821244 [354] [1435] 5 hSpCas9 negative selection 2365568
48698908 48698931 X + 24336569 KBM7 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 -0.6878772500826942 [276] [468] -5 hSpCas9 negative selection 2365569
48698921 48698944 X + 24336569 KBM7 viability GTCTTCTTGGAATCAGCTGCAGG SUV39H1 ENSG00000101945 -1.1041541664308776 [412] [523] -7 hSpCas9 negative selection 2365570
48698936 48698959 X + 24336569 KBM7 viability GCTGCAGGACCTGTGCCGCCTGG SUV39H1 ENSG00000101945 0.17257273263457368 [269] [829] 1 hSpCas9 negative selection 2365571
48696605 48696628 X - 25494202 A375 resistance to PLX-4720 (puromycin) CCCGGCTCGGTCCCGGAGGCGGG SUV39H1 ENSG00000101945 -1.7161166096502896 [32,117] [2,5] -8 dCas9-VP64 positive selection 2432148
48696574 48696597 X - 25494202 A375 resistance to PLX-4720 (puromycin) GCGCTTTCCCAGAGTGCGTCTGG SUV39H1 ENSG00000101945 0.9763786437659832 [11,116] [5,51] 4 dCas9-VP64 positive selection 2432149
48696629 48696652 X + 25494202 A375 resistance to PLX-4720 (puromycin) GGCAGGGAGGGGTTCGGTCACGG SUV39H1 ENSG00000101945 -0.35316881562912206 [329,47] [48,12] -2 dCas9-VP64 positive selection 2432150
48696605 48696628 X - 25494202 A375 resistance to PLX-4720 (zeocin) CCCGGCTCGGTCCCGGAGGCGGG SUV39H1 ENSG00000101945 -1.0980551608254936 [5,72] [3,6] -9 dCas9-VP64 positive selection 2527403
48696574 48696597 X - 25494202 A375 resistance to PLX-4720 (zeocin) GCGCTTTCCCAGAGTGCGTCTGG SUV39H1 ENSG00000101945 0.3769471720891432 [71,46] [28,20] 3 dCas9-VP64 positive selection 2527404
48696629 48696652 X + 25494202 A375 resistance to PLX-4720 (zeocin) GGCAGGGAGGGGTTCGGTCACGG SUV39H1 ENSG00000101945 -0.8880540391422258 [192,23] [19,17] -8 dCas9-VP64 positive selection 2527405
48698936 48698959 X + 27260157 DLD1 viability GCTGCAGGACCTGTGCCGCCTGG SUV39H1 ENSG00000101945 -0.463163624352158 [] [] -4 hSpCas9 negative selection 2613217
48698898 48698921 X - 27260157 DLD1 viability TTGCAACACACGCTGCAGCCTGG SUV39H1 ENSG00000101945 1.09454603082471 [] [] 9 hSpCas9 negative selection 2642560
48698936 48698959 X + 27260157 HT1080 viability GCTGCAGGACCTGTGCCGCCTGG SUV39H1 ENSG00000101945 0.820859849890996 [] [] 7 hSpCas9 negative selection 2689347
48698898 48698921 X - 27260157 HT1080 viability TTGCAACACACGCTGCAGCCTGG SUV39H1 ENSG00000101945 0.907208791126874 [] [] 7 hSpCas9 negative selection 2718690
48698936 48698959 X + 27260157 MKN45 viability GCTGCAGGACCTGTGCCGCCTGG SUV39H1 ENSG00000101945 -0.520609358634072 [] [] -6 hSpCas9 negative selection 2765477
48698898 48698921 X - 27260157 MKN45 viability TTGCAACACACGCTGCAGCCTGG SUV39H1 ENSG00000101945 1.66479452665924 [] [] 9 hSpCas9 negative selection 2794820
48698936 48698959 X + 27260157 RKO viability GCTGCAGGACCTGTGCCGCCTGG SUV39H1 ENSG00000101945 -0.102786238063382 [] [] 0 hSpCas9 negative selection 2841607
48698898 48698921 X - 27260157 RKO viability TTGCAACACACGCTGCAGCCTGG SUV39H1 ENSG00000101945 1.00480013481955 [] [] 9 hSpCas9 negative selection 2870950
48698936 48698959 X + 27260157 SF268 viability GCTGCAGGACCTGTGCCGCCTGG SUV39H1 ENSG00000101945 0.436194871667889 [] [] 7 hSpCas9 negative selection 2917737
48698898 48698921 X - 27260157 SF268 viability TTGCAACACACGCTGCAGCCTGG SUV39H1 ENSG00000101945 0.782852485375151 [] [] 8 hSpCas9 negative selection 2947080
48698908 48698931 + 24336571 A375 resistance to PLX after 7 days GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 -0.1878772239813811 [15,14] [13,12] -6 hSpCas9 positive selection 3148434
48698908 48698931 + 24336571 A375 resistance to PLX after 14 days GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 -0.5628147621509281 [17,14] [4,4] -6 hSpCas9 positive selection 3206227
48698908 48698931 + 24336571 A375 viability after 7 days GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.3779046062512204 [11] [15,14] 6 hSpCas9 negative selection 3264020
48698908 48698931 + 24336571 A375 viability after 14 days GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.47592247348197475 [11] [17,14] 6 hSpCas9 negative selection 3321813
48698908 48698931 X + 27383988 293T resistance to West Nile virus (flavivirus) GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 -1.3500041023037754 [389,389] [0,0] -8 hSpCas9 positive selection 3395750
48696769 48696792 X + 26780180 A375 viability (Avana lentiCRISPRv2) TTAGCCGTGGGGAAAGATGGCGG SUV39H1 ENSG00000101945 2.05857288230517 [] [] 3 hSpCas9 negative selection 3565537
48696769 48696792 X + 26780180 A375 viability (Avana lentiGuide) TTAGCCGTGGGGAAAGATGGCGG SUV39H1 ENSG00000101945 2.22743448993053 [] [] 2 hSpCas9 negative selection 3674196
48696769 48696792 X + 26780180 A375 resistance to vemurafenib (Avana lentiCRISPRv2) TTAGCCGTGGGGAAAGATGGCGG SUV39H1 ENSG00000101945 0.3790586278656516 [4] [5,6] 9 hSpCas9 positive selection 3782803
48696769 48696792 X + 26780180 A375 resistance to vemurafenib (Avana lentiGuide) TTAGCCGTGGGGAAAGATGGCGG SUV39H1 ENSG00000101945 0.3892054401027066 [5] [5,6] 9 hSpCas9 positive selection 3891410
48698908 48698931 X + 26780180 A375 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.282402892480094 [] [] 0 hSpCas9 negative selection 4001075
48698908 48698931 X + 26780180 HT29 viability (GeCKOv2 library) GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.241401093702162 [] [] 0 hSpCas9 negative selection 4109041
48698908 48698931 X + 26780180 A375 resistance to vemurafenib (GeCKOv1 lentiCRISPRv1) GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 -0.04400176006432297 [3] [2,2] -1 hSpCas9 positive selection 4174686
48698908 48698931 X + 26780180 A375 resistance to vemurafenib (GeCKOv1 lentiGuide) GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 -0.13983452392721568 [3] [3,0,2,0] -2 hSpCas9 positive selection 4238708
48698908 48698931 X + 26780180 A375 resistance to vemurafenib (GeCKOv2 lentiGuide) GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.2812393691902293 [3] [3,2] 5 hSpCas9 positive selection 4365740
48697130 48697153 X - 27661255 K562 viability GAATGGGTAACGGTCACCAGGGG SUV39H1 ENSG00000101945 0.09937876001767132 [1003,1201] [969,915] 3 dCas9-KRAB negative selection 5515329
48697146 48697169 X - 27661255 K562 viability GTCTCGCGTGGACACCGAATGGG SUV39H1 ENSG00000101945 -0.021863500852559725 [1321,1203] [1111,895] -1 dCas9-KRAB negative selection 5515330
48698908 48698931 X + 27260156 BXPC3 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.08687622750156498 [728] [629,789,863,992] 2 hSpCas9 negative selection 5638200
48698908 48698931 X + 27260156 A673 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.10714631475462699 [728] [1045,852,994,885] 2 hSpCas9 negative selection 5759451
48698908 48698931 X + 27260156 A375 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.2532574146400801 [728] [1016,1136,843,1067] 3 hSpCas9 negative selection 5880702
48698908 48698931 X + 27260156 COLO741 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.2133660532525612 [728] [1077,1104,1055] 4 hSpCas9 negative selection 6001953
48698908 48698931 X + 27260156 CAL120 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.3119769677356471 [728] [1318,1240,851] 5 hSpCas9 negative selection 6123204
48698908 48698931 X + 27260156 CADOES1 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.4475732589047924 [728] [866,696,1085,1052] 7 hSpCas9 negative selection 6244455
48698908 48698931 X + 27260156 EWS502 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.3601842892061864 [728] [960,940,936,1136] 6 hSpCas9 negative selection 6365706
48698908 48698931 X + 27260156 EW8 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.23992569147632614 [728] [840,740,608,628] 4 hSpCas9 negative selection 6486957
48698908 48698931 X + 27260156 CORL105 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.11669407673280874 [728] [836,896,1118,875] 2 hSpCas9 negative selection 6608208
48698908 48698931 X + 27260156 HS294T viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.39215592894525375 [728] [291,292,466,449] 5 hSpCas9 negative selection 6729459
48698908 48698931 X + 27260156 HCC44 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.26921137626935876 [728] [1088,966,998,926] 4 hSpCas9 negative selection 6850710
48698908 48698931 X + 27260156 G402 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.6426307984123113 [728] [1366,1523,1461,1209] 7 hSpCas9 negative selection 6971961
48698908 48698931 X + 27260156 L33 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.16687289099587355 [728] [864,316,548,760] 3 hSpCas9 negative selection 7093212
48698908 48698931 X + 27260156 K562 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.3435582716430087 [728] [597,1218,826,657] 4 hSpCas9 negative selection 7214463
48698908 48698931 X + 27260156 HT29 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.22141878757605815 [728] [947,869,1184,1093] 4 hSpCas9 negative selection 7335714
48698908 48698931 X + 27260156 MHHES1 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.3523169729059291 [728] [930,1078,1339,854] 6 hSpCas9 negative selection 7456965
48698908 48698931 X + 27260156 MEWO viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.10142492680759718 [728] [758,776,663] 2 hSpCas9 negative selection 7578216
48698908 48698931 X + 27260156 LNCAPCLONEFGC viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.2714726143515489 [728] [822,773,905,701] 4 hSpCas9 negative selection 7699467
48698908 48698931 X + 27260156 PANC0327 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.4204466331099782 [728] [976,626,1150,751] 6 hSpCas9 negative selection 7820718
48698908 48698931 X + 27260156 NCIH2009 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.24006089660315355 [728] [1579,996,1107] 3 hSpCas9 negative selection 7941969
48698908 48698931 X + 27260156 NCIH1373 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.38715277908055346 [728] [1282,1123,929,250] 4 hSpCas9 negative selection 8063220
48698908 48698931 X + 27260156 PATU8902 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.8031973448591211 [728] [2111,1691,1273,2165] 8 hSpCas9 negative selection 8184471
48698908 48698931 X + 27260156 PANC1 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.30309787576667213 [728] [737,992,658,737] 5 hSpCas9 negative selection 8305722
48698908 48698931 X + 27260156 PANC0813 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.28495553875023827 [728] [1126,947,882,1210] 4 hSpCas9 negative selection 8426973
48698908 48698931 X + 27260156 RDES viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.31449938056254734 [728] [925,853,1271,1154] 5 hSpCas9 negative selection 8548224
48698908 48698931 X + 27260156 PC3 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.0906581282161254 [728] [489,696,1317,858] 2 hSpCas9 negative selection 8669475
48698908 48698931 X + 27260156 PATU8988T viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.1019229476212512 [728] [724,723,619,970] 1 hSpCas9 negative selection 8790726
48698908 48698931 X + 27260156 T47D viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.2794163348842067 [728] [1019,945,1059,1105] 6 hSpCas9 negative selection 8911977
48698908 48698931 X + 27260156 SU8686 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.232536593159538 [728] [708,771,832,1150] 4 hSpCas9 negative selection 9033228
48698908 48698931 X + 27260156 SKES1 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.23542833646794947 [728] [1041,838,848,724] 5 hSpCas9 negative selection 9154479
48698908 48698931 X + 27260156 TOV112D viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.1326869808125547 [728] [802,1157,572,755] 2 hSpCas9 negative selection 9275730
48698908 48698931 X + 27260156 TC71 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.059072248599297605 [728] [865,728,806,855] 1 hSpCas9 negative selection 9396981
48698908 48698931 X + 27260156 TC32 viability GCGTGTGTTGCAAGTCTTCTTGG SUV39H1 ENSG00000101945 0.6273414881009473 [728] [1026,1042,1101,1004] 9 hSpCas9 negative selection 9518232
48695834 48695857 X + 27869803 HPAFII viability after 27 days TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 0.9093758589981129 [318] [386,254,NaN] 7 hSpCas9 negative selection 9608930
48695834 48695857 X + 27869803 HPAFII viability after 15 days TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 0.1739134224732687 [318] [506,311,NaN] 2 hSpCas9 negative selection 9691379
48695834 48695857 X + 27869803 ASPC1 viability after 36 days TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 0.03784710297779009 [758] [335,236,251] 0 hSpCas9 negative selection 9773828
48695834 48695857 X + 27869803 PATU8988S viability after 35 days TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 0.9598309287083349 [587] [516,403,NaN] 8 hSpCas9 negative selection 9856277
48695834 48695857 X + 27869803 PATU8988S viability after 31 days TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 0.6412248878354735 [587] [355,377,NaN] 7 hSpCas9 negative selection 9938726
48695834 48695857 X + 27869803 HPAFII viability after 35 days TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 0.543883825983263 [318] [170,307,NaN] 3 hSpCas9 negative selection 10021175
48695834 48695857 X + 27869803 HPAFII viability after 31 days TCGCCTGAGAAATGACAGACTGG SUV39H1 ENSG00000101945 0.557265722380873 [318] [261,264,NaN] 4 hSpCas9 negative selection 10103624